Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS20515 and RPSI07_RS20520 are separated by 57 nucleotidesRPSI07_RS20520 and RPSI07_RS20525 are separated by 14 nucleotidesRPSI07_RS20525 and RPSI07_RS25215 overlap by 35 nucleotidesRPSI07_RS25215 and RPSI07_RS20530 are separated by 5 nucleotides RPSI07_RS20515: RPSI07_RS20515 - undecaprenyl-diphosphate phosphatase, at 2,778,390 to 2,779,271 _RS20515 RPSI07_RS20520: RPSI07_RS20520 - DUF1439 domain-containing protein, at 2,779,329 to 2,779,925 _RS20520 RPSI07_RS20525: RPSI07_RS20525 - YkgJ family cysteine cluster protein, at 2,779,940 to 2,780,197 _RS20525 RPSI07_RS25215: RPSI07_RS25215 - hypothetical protein, at 2,780,163 to 2,780,384 _RS25215 RPSI07_RS20530: RPSI07_RS20530 - TetR/AcrR family transcriptional regulator, at 2,780,390 to 2,781,133 _RS20530
Group Condition RPSI07_RS20515 RPSI07_RS20520 RPSI07_RS20525 RPSI07_RS25215 RPSI07_RS20530
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. -0.0 N.D. -1.4 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.3 N.D. -1.4 +0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.2 N.D. -1.5 +0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.2 N.D. -1.4 +0.7
stress SMSA with Ralstonia_antibiotic_mix N.D. -0.3 N.D. -0.9 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol N.D. -0.2 N.D. -1.0 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. -0.1 N.D. -0.9 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin N.D. -0.1 N.D. -1.3 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. +0.2 N.D. -1.0 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. -0.2 N.D. -0.7 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin N.D. -0.0 N.D. -0.9 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.4 N.D. -0.4 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.1 N.D. -0.9 +0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. -0.1 N.D. -0.8 +0.6
cpg CPG N.D. -0.2 N.D. -0.5 +0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.1 N.D. -0.6 +0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. -0.7 N.D. +0.1 +0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.6 N.D. -0.1 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin N.D. -0.8 N.D. +0.6 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet N.D. -0.5 N.D. +0.7 -0.1
smsa no antibiotic control SMSA no antibiotic control N.D. -0.5 N.D. +0.4 +0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -0.3 N.D. -0.4 +0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. -0.2 N.D. -0.8 +1.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. +0.0 N.D. -0.5 +0.6
smsa no antibiotic control SMSA no antibiotic control N.D. +0.2 N.D. -0.7 +0.7
cpg no stress control CPG no stress control N.D. -0.5 N.D. +0.7 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +0.1 N.D. -0.6 +0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +0.2 N.D. -0.7 +0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. -0.2 N.D. +0.5 +0.5
m63_quarter_strength M63_quarter_strength N.D. +0.6 N.D. +0.6 +0.1
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