Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS20505 and RPSI07_RS20510 are separated by 9 nucleotidesRPSI07_RS20510 and RPSI07_RS20515 are separated by 112 nucleotidesRPSI07_RS20515 and RPSI07_RS20520 are separated by 57 nucleotidesRPSI07_RS20520 and RPSI07_RS20525 are separated by 14 nucleotides RPSI07_RS20505: RPSI07_RS20505 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 2,776,400 to 2,777,155 _RS20505 RPSI07_RS20510: RPSI07_RS20510 - NADH:flavin oxidoreductase/NADH oxidase, at 2,777,165 to 2,778,277 _RS20510 RPSI07_RS20515: RPSI07_RS20515 - undecaprenyl-diphosphate phosphatase, at 2,778,390 to 2,779,271 _RS20515 RPSI07_RS20520: RPSI07_RS20520 - DUF1439 domain-containing protein, at 2,779,329 to 2,779,925 _RS20520 RPSI07_RS20525: RPSI07_RS20525 - YkgJ family cysteine cluster protein, at 2,779,940 to 2,780,197 _RS20525
Group Condition RPSI07_RS20505 RPSI07_RS20510 RPSI07_RS20515 RPSI07_RS20520 RPSI07_RS20525
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -1.2 -0.2 N.D. +0.1 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.3 -0.5 N.D. -0.4 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.9 -0.2 N.D. -0.1 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.9 -0.2 N.D. -0.1 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.6 -0.0 N.D. -0.6 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.8 -0.2 N.D. -0.2 N.D.
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.7 -0.3 N.D. -0.2 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.5 -0.4 N.D. -0.3 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.8 -0.1 N.D. -0.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.5 -0.3 N.D. -0.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.6 -0.2 N.D. -0.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix -0.4 -0.2 N.D. -0.3 N.D.
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 -0.1 N.D. -0.5 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.6 -0.3 N.D. -0.0 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.3 -0.1 N.D. -0.6 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.6 +0.0 N.D. -0.3 N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.8 -0.2 N.D. +0.2 N.D.
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.8 -0.3 N.D. +0.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.3 +0.1 N.D. -0.5 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -0.7 +0.1 N.D. -0.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin +0.3 +0.1 N.D. -0.8 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.5 -0.2 N.D. -0.7 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -0.0 +0.6 N.D. -0.6 N.D.
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 +0.1 N.D. -0.4 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.8 -0.3 N.D. -0.3 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.9 +0.2 N.D. -0.2 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.3 -0.2 N.D. +0.1 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.4 -0.0 N.D. +0.0 N.D.
m63_quarter_strength M63_quarter_strength +0.3 +0.5 N.D. +0.6 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.7 -0.0 N.D. +0.2 N.D.
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RPSI07_RS20505
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RPSI07_RS20510
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RPSI07_RS20520
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RPSI07_RS20525
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