Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS20315 and RPSI07_RS20320 overlap by 4 nucleotidesRPSI07_RS20320 and RPSI07_RS20325 are separated by 69 nucleotidesRPSI07_RS20325 and RPSI07_RS20330 are separated by 399 nucleotidesRPSI07_RS20330 and RPSI07_RS20335 are separated by 117 nucleotides RPSI07_RS20315: RPSI07_RS20315 - protein TolQ, at 2,736,757 to 2,737,449 _RS20315 RPSI07_RS20320: RPSI07_RS20320 - tol-pal system-associated acyl-CoA thioesterase, at 2,737,446 to 2,737,850 _RS20320 RPSI07_RS20325: RPSI07_RS20325 - NAD(P)-dependent oxidoreductase, at 2,737,920 to 2,738,672 _RS20325 RPSI07_RS20330: RPSI07_RS20330 - serine hydroxymethyltransferase, at 2,739,072 to 2,740,319 _RS20330 RPSI07_RS20335: RPSI07_RS20335 - transcriptional regulator NrdR, at 2,740,437 to 2,740,886 _RS20335
Group Condition RPSI07_RS20315 RPSI07_RS20320 RPSI07_RS20325 RPSI07_RS20330 RPSI07_RS20335
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.0 -1.5 -0.1 -3.0 -1.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.7 -4.0 +0.4 -2.2 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.8 -0.2 -0.4 -2.4 -2.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 -1.2 +0.2 -3.0 -2.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.8 -1.8 -0.1 -2.2 -1.5
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -1.3 -0.7 +0.2 -2.9 -1.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.5 -0.8 -0.1 -1.9 -1.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.3 -1.6 +0.3 -2.9 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.5 -1.8 +0.0 -2.8 -0.5
m63_quarter_strength M63_quarter_strength -0.5 -0.7 +0.0 -4.5 +0.5
m63_quarter_strength M63_quarter_strength -0.1 -1.7 -0.2 -2.6 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.2 -0.8 -0.2 -2.9 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.2 -0.7 +0.3 -2.1 -0.6
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -1.5 +0.0 -0.1 -3.0 +0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.3 -0.8 +0.0 -2.6 -0.4
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 -0.6 +0.1 -1.2 -1.5
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.9 -0.8 +0.2 -1.5 -0.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -0.2 -0.5 -0.1 -1.6 -1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.7 -2.4 -0.1 +0.2 -0.4
cpg CPG -0.9 -0.9 +0.2 -1.1 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -2.2 +0.6 -0.1 +1.1 -2.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.3 -0.3 +0.8 -2.1 -0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -1.3 -0.5 +0.0 +0.7 -1.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.9 -1.4 -0.4 +0.5 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.9 -0.9 +0.2 +0.9 -1.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -1.2 -1.0 -0.4 +0.0 +0.8
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.0 -1.7 +0.1 -1.0 +1.0
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.4 -1.9 +0.4 +0.1 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -1.7 -0.1 +0.0 +0.6 +0.7
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 +2.3 -0.8 +1.9 -0.0
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