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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS19610 and RPSI07_RS19615 are separated by 54 nucleotides
RPSI07_RS19615 and RPSI07_RS19620 are separated by 177 nucleotides
RPSI07_RS19620 and RPSI07_RS19625 are separated by 32 nucleotides
RPSI07_RS19625 and RPSI07_RS19630 overlap by 11 nucleotides
RPSI07_RS19610: RPSI07_RS19610 - electron transfer flavoprotein subunit alpha, at 2,578,075 to 2,579,010
_RS19610
RPSI07_RS19615: RPSI07_RS19615 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,579,065 to 2,579,814
_RS19615
RPSI07_RS19620: RPSI07_RS19620 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,579,992 to 2,580,792
_RS19620
RPSI07_RS19625: RPSI07_RS19625 - ABC transporter permease, at 2,580,825 to 2,581,478
_RS19625
RPSI07_RS19630: RPSI07_RS19630 - methionine ABC transporter ATP-binding protein, at 2,581,468 to 2,582,517
_RS19630
Group
Condition
RPSI07
_RS19610
RPSI07
_RS19615
RPSI07
_RS19620
RPSI07
_RS19625
RPSI07
_RS19630
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
N.D.
+0.2
-3.5
-0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
N.D.
-0.2
-1.5
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
N.D.
N.D.
-0.1
-1.7
-0.7
cpg
CPG
N.D.
N.D.
+0.4
-0.5
-2.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
N.D.
N.D.
-0.3
-1.6
-0.2
cpg
CPG
N.D.
N.D.
+0.2
-0.7
-1.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
N.D.
+0.0
-0.8
-1.1
m63_quarter_strength
M63_quarter_strength
N.D.
N.D.
+0.1
-1.0
-1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
N.D.
N.D.
+0.1
-1.5
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
N.D.
-0.3
-0.4
-1.0
smsa no antibiotic control
SMSA no antibiotic control
N.D.
N.D.
+0.2
-0.9
-0.9
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
N.D.
+0.1
-0.6
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
N.D.
N.D.
+0.0
-1.7
+0.6
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
N.D.
N.D.
-0.0
-1.5
+1.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
N.D.
-0.6
+1.0
-0.9
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
N.D.
N.D.
-0.4
-1.1
+1.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
N.D.
N.D.
-0.3
-0.9
+0.8
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
N.D.
N.D.
-0.6
-0.9
+1.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
N.D.
-0.3
-0.7
+1.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
N.D.
-0.2
+1.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
N.D.
+0.0
+1.1
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
N.D.
-0.3
+2.1
-0.7
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
N.D.
N.D.
-0.2
-0.1
+1.8
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
N.D.
N.D.
+0.1
+0.1
+1.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
N.D.
N.D.
+0.2
+0.2
+1.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
N.D.
N.D.
+0.1
+0.1
+1.7
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
N.D.
N.D.
+0.3
-0.6
+2.2
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
N.D.
+0.1
+0.1
+1.9
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
N.D.
N.D.
+0.3
+0.1
+1.9
m63_quarter_strength
M63_quarter_strength
N.D.
N.D.
+0.1
+1.0
+1.4
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