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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS19395 and RPSI07_RS19400 are separated by 21 nucleotides
RPSI07_RS19400 and RPSI07_RS19405 overlap by 19 nucleotides
RPSI07_RS19405 and RPSI07_RS19410 are separated by 8 nucleotides
RPSI07_RS19410 and RPSI07_RS19415 are separated by 49 nucleotides
RPSI07_RS19395: RPSI07_RS19395 - multidrug ABC transporter ATP-binding protein, at 2,535,885 to 2,537,716
_RS19395
RPSI07_RS19400: RPSI07_RS19400 - chromate transporter, at 2,537,738 to 2,538,283
_RS19400
RPSI07_RS19405: RPSI07_RS19405 - chromate transporter, at 2,538,265 to 2,538,846
_RS19405
RPSI07_RS19410: RPSI07_RS19410 - DNA topoisomerase IV subunit A, at 2,538,855 to 2,541,200
_RS19410
RPSI07_RS19415: RPSI07_RS19415 - lytic transglycosylase domain-containing protein, at 2,541,250 to 2,542,104
_RS19415
Group
Condition
RPSI07
_RS19395
RPSI07
_RS19400
RPSI07
_RS19405
RPSI07
_RS19410
RPSI07
_RS19415
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.1
-0.3
-0.4
N.D.
-0.8
stress
SMSA with Ralstonia_antibiotic_mix
+0.1
-0.4
-0.5
N.D.
-0.5
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.3
+0.3
-1.0
N.D.
-0.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.1
-0.7
-0.5
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.1
-0.3
-0.3
N.D.
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
-1.0
+0.4
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.1
-0.5
-0.3
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.1
-0.5
-0.4
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
-0.6
+0.3
N.D.
-0.7
cpg no stress control
CPG no stress control
-0.0
-0.4
-0.1
N.D.
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
-0.3
-0.7
N.D.
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
-0.6
+0.1
N.D.
-0.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.3
-0.5
-0.1
N.D.
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.2
-0.3
+0.3
N.D.
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
-0.3
-0.4
N.D.
+0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.1
+0.4
+0.3
N.D.
-1.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
-0.7
+1.1
N.D.
-0.0
m63_quarter_strength
M63_quarter_strength
+0.2
+0.3
-0.5
N.D.
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.0
-0.5
+0.5
N.D.
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
+0.3
+0.5
N.D.
-0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.0
-0.2
+0.7
N.D.
+0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.1
-0.3
+0.9
N.D.
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.4
-0.1
+0.1
N.D.
+0.5
cpg
CPG
+0.0
-0.0
+0.3
N.D.
+0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.0
+0.6
+0.7
N.D.
-0.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
+0.1
+1.2
N.D.
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
-0.1
-0.0
+1.1
N.D.
+0.3
m63_quarter_strength
M63_quarter_strength
+0.1
+0.4
+0.8
N.D.
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.0
-0.1
+1.2
N.D.
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.0
+0.5
+0.9
N.D.
+0.5
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