Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS19220 and RPSI07_RS19225 are separated by 19 nucleotidesRPSI07_RS19225 and RPSI07_RS19230 are separated by 36 nucleotidesRPSI07_RS19230 and RPSI07_RS19235 are separated by 19 nucleotidesRPSI07_RS19235 and RPSI07_RS19240 are separated by 161 nucleotides RPSI07_RS19220: RPSI07_RS19220 - ABC transporter permease, at 2,495,911 to 2,496,957 _RS19220 RPSI07_RS19225: RPSI07_RS19225 - LacI family transcriptional regulator, at 2,496,977 to 2,498,020 _RS19225 RPSI07_RS19230: RPSI07_RS19230 - ribokinase, at 2,498,057 to 2,499,004 _RS19230 RPSI07_RS19235: RPSI07_RS19235 - recombinase, at 2,499,024 to 2,501,123 _RS19235 RPSI07_RS19240: RPSI07_RS19240 - excinuclease ABC subunit UvrB, at 2,501,285 to 2,503,375 _RS19240
Group Condition RPSI07_RS19220 RPSI07_RS19225 RPSI07_RS19230 RPSI07_RS19235 RPSI07_RS19240
cpg CPG +0.7 -0.9 -0.6 -0.1 -0.6
smsa no antibiotic control SMSA no antibiotic control +0.8 -0.3 -1.2 +0.0 -0.4
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +2.3 -1.6 -0.0 -0.2 -1.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +1.0 -0.9 -0.1 +0.2 -0.7
m63_quarter_strength M63_quarter_strength -0.4 -0.7 +0.7 +0.4 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.6 -1.0 -0.2 -0.0 -0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.7 -1.5 +0.1 +0.0 -0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +2.4 -0.7 -1.1 +0.3 -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.6 -0.7 -0.5 +0.1 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +2.0 -0.8 -0.3 -0.1 -0.2
m63_quarter_strength M63_quarter_strength -0.9 +0.9 +0.7 -0.1 +0.1
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +1.1 -0.3 +0.2 +0.3 -0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.8 -0.2 +0.9 +0.2 -0.8
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.8 -0.4 +0.8 +0.2 -0.4
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.8 -0.4 -0.4 -0.1 +0.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.8 -0.4 +1.0 +0.2 -0.4
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.4 +0.2 +1.0 +0.3 -0.7
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.9 -0.2 -0.1 -0.1 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.7 -0.2 +0.6 -0.2 -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +2.2 -1.2 +1.1 +0.0 -0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.3 +1.2 -0.2 +0.6 -1.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +2.7 -1.3 +1.3 +0.0 -1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.8 +0.2 +0.4 +0.2 -0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +2.6 -1.2 +1.4 -0.1 -0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +2.3 -0.2 -0.1 +0.3 +0.1
stress SMSA with Ralstonia_antibiotic_mix +0.6 +1.5 +0.1 +0.2 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.4 +0.8 +0.2 +0.5 -0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +2.1 -0.3 +1.2 -0.1 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +2.4 +0.2 -0.0 +0.4 -0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +3.2 -0.6 +1.1 +0.3 -0.7
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RPSI07_RS19220
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RPSI07_RS19225
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RPSI07_RS19235
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RPSI07_RS19240
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