Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS18480 and RPSI07_RS18485 are separated by 13 nucleotidesRPSI07_RS18485 and RPSI07_RS18490 are separated by 57 nucleotidesRPSI07_RS18490 and RPSI07_RS18495 are separated by 22 nucleotidesRPSI07_RS18495 and RPSI07_RS18500 are separated by 150 nucleotides RPSI07_RS18480: RPSI07_RS18480 - tryptophan--tRNA ligase, at 2,348,122 to 2,349,324 _RS18480 RPSI07_RS18485: RPSI07_RS18485 - site-2 protease family protein, at 2,349,338 to 2,350,015 _RS18485 RPSI07_RS18490: RPSI07_RS18490 - threonylcarbamoyl-AMP synthase, at 2,350,073 to 2,350,696 _RS18490 RPSI07_RS18495: RPSI07_RS18495 - PHP domain-containing protein, at 2,350,719 to 2,351,579 _RS18495 RPSI07_RS18500: RPSI07_RS18500 - NAD(P)/FAD-dependent oxidoreductase, at 2,351,730 to 2,352,809 _RS18500
Group Condition RPSI07_RS18480 RPSI07_RS18485 RPSI07_RS18490 RPSI07_RS18495 RPSI07_RS18500
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.8 N.D. +0.2 -1.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. -1.4 N.D. -0.1 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. -0.2 N.D. +0.0 -0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.7 N.D. +0.4 -0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days N.D. -1.6 N.D. +0.3 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -1.0 N.D. +0.2 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.8 N.D. +0.5 -0.4
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days N.D. -0.4 N.D. +0.4 -0.4
cpg no stress control CPG no stress control N.D. -0.4 N.D. +0.4 -0.4
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days N.D. -0.9 N.D. +0.3 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.8 N.D. +0.6 -0.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days N.D. -1.2 N.D. +0.4 +0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +0.0 N.D. +0.6 -0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.5 N.D. +0.5 -0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. +0.5 N.D. +0.1 -0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.4 N.D. +0.6 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. +0.1 N.D. -0.6 +0.6
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -1.3 N.D. +1.5 -0.0
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. +0.3 N.D. +0.5 -0.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. -0.5 N.D. +0.3 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. +0.1 N.D. -0.4 +0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +0.4 N.D. +0.7 -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.3 N.D. +0.8 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet N.D. +0.6 N.D. -0.5 +0.5
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. +0.5 N.D. +0.5 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin N.D. +0.6 N.D. -0.4 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.1 N.D. +0.9 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. +0.2 N.D. -0.2 +0.9
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +0.1 N.D. +0.9 +0.4
cpg CPG N.D. +0.3 N.D. +0.5 +0.6
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