Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS18435 and RPSI07_RS18440 are separated by 482 nucleotidesRPSI07_RS18440 and RPSI07_RS18445 overlap by 1 nucleotidesRPSI07_RS18445 and RPSI07_RS18450 are separated by 55 nucleotidesRPSI07_RS18450 and RPSI07_RS18455 are separated by 11 nucleotides RPSI07_RS18435: RPSI07_RS18435 - chemotaxis protein, at 2,335,968 to 2,337,821 _RS18435 RPSI07_RS18440: RPSI07_RS18440 - DNA mismatch repair protein MutS, at 2,338,304 to 2,340,952 _RS18440 RPSI07_RS18445: RPSI07_RS18445 - hypothetical protein, at 2,340,952 to 2,342,019 _RS18445 RPSI07_RS18450: RPSI07_RS18450 - peptidylprolyl isomerase, at 2,342,075 to 2,342,599 _RS18450 RPSI07_RS18455: RPSI07_RS18455 - cupin domain-containing protein, at 2,342,611 to 2,343,840 _RS18455
Group Condition RPSI07_RS18435 RPSI07_RS18440 RPSI07_RS18445 RPSI07_RS18450 RPSI07_RS18455
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.2 -0.3 -0.3 -2.7 -1.0
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.0 -1.0 -0.0 -3.4 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.4 -0.2 -0.3 -2.3 -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.2 -0.1 +0.1 -0.8 -2.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.2 +0.4 -0.4 -1.6 -1.6
stress SMSA with Ralstonia_antibiotic_mix -0.3 +0.0 -0.3 -1.8 -0.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.0 +0.0 +0.2 -0.7 -2.2
smsa no antibiotic control SMSA no antibiotic control -0.0 -0.0 -0.2 -2.0 -0.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.1 +0.0 +0.0 -1.3 -1.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.1 -0.1 +0.0 -1.4 -1.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.0 -0.1 -0.0 -1.2 -1.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.3 -0.2 -0.4 -0.9 -0.5
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.1 +0.0 +0.4 -0.6 -1.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 -0.0 +0.4 -1.6 -0.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.2 +0.4 -1.7 -1.0
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.3 +0.1 -0.0 -0.7 -1.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.2 +0.1 -1.1 -0.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 -0.2 +0.4 -1.3 -0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.4 -0.1 +0.3 +0.3 -2.1
m63_quarter_strength M63_quarter_strength +0.0 -0.3 +0.4 -1.9 +0.7
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.0 +0.1 -0.4 +1.0 -1.8
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 +0.3 -0.0 -1.9 +0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol +0.0 +0.4 +0.9 -0.2 -1.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.7 +0.3 -0.3 -0.9 +0.4
m63_quarter_strength M63_quarter_strength +0.0 -0.4 -0.2 -1.0 +2.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 +0.7 -0.7 -1.5 +2.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.5 +0.2 -0.7 +1.3 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.1 +0.0 +0.0 -0.7 +1.9
m63_quarter_strength M63_quarter_strength -0.1 +0.3 +0.2 -0.0 +2.9
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.0 +0.3 +0.5 +0.7 +2.1
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RPSI07_RS18435
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RPSI07_RS18455
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