Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS17855 and RPSI07_RS17860 are separated by 10 nucleotidesRPSI07_RS17860 and RPSI07_RS17865 are separated by 133 nucleotidesRPSI07_RS17865 and RPSI07_RS17870 are separated by 83 nucleotidesRPSI07_RS17870 and RPSI07_RS17875 overlap by 6 nucleotides RPSI07_RS17855: RPSI07_RS17855 - polysaccharide deacetylase family protein, at 2,209,550 to 2,210,371 _RS17855 RPSI07_RS17860: RPSI07_RS17860 - YncE family protein, at 2,210,382 to 2,211,374 _RS17860 RPSI07_RS17865: RPSI07_RS17865 - ATP-dependent RNA helicase HrpA, at 2,211,508 to 2,215,488 _RS17865 RPSI07_RS17870: RPSI07_RS17870 - amino-acid N-acetyltransferase, at 2,215,572 to 2,216,969 _RS17870 RPSI07_RS17875: RPSI07_RS17875 - inositol 2-dehydrogenase, at 2,216,964 to 2,217,992 _RS17875
Group Condition RPSI07_RS17855 RPSI07_RS17860 RPSI07_RS17865 RPSI07_RS17870 RPSI07_RS17875
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.3 N.D. -4.0 -1.0 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -0.6 N.D. -1.6 -1.9 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.4 N.D. -2.8 -0.3 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -0.5 N.D. -2.1 -1.0 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.8 N.D. -3.0 +0.8 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.2 N.D. -1.5 -1.5 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.8 N.D. -1.6 -1.1 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.6 N.D. -3.9 +1.5 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.4 N.D. -0.7 -1.6 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.8 N.D. -0.5 -1.3 -0.2
stress SMSA with Ralstonia_antibiotic_mix -0.7 N.D. -0.7 -1.4 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 N.D. +0.2 -2.7 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -0.5 N.D. -0.4 -1.6 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 N.D. +0.0 -2.0 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.8 N.D. -0.4 -0.8 +0.0
smsa no antibiotic control SMSA no antibiotic control -0.7 N.D. -0.2 -1.2 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.7 N.D. -3.1 +0.7 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +1.3 N.D. -1.8 -0.5 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 N.D. +0.0 -1.6 +0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.7 N.D. -1.5 +0.3 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 N.D. +0.0 -1.5 +0.9
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.1 N.D. +0.3 -1.3 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol +1.0 N.D. -0.0 -1.3 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +1.0 N.D. -3.5 +2.4 +0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 N.D. +0.5 -1.5 +0.8
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.5 N.D. -0.1 +1.4 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -1.0 N.D. -0.0 +1.9 -0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +1.0 N.D. +0.0 +1.0 -0.0
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 N.D. +0.4 +1.5 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +1.0 N.D. -0.0 +2.3 -0.0
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