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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS17855 and RPSI07_RS17860 are separated by 10 nucleotides
RPSI07_RS17860 and RPSI07_RS17865 are separated by 133 nucleotides
RPSI07_RS17865 and RPSI07_RS17870 are separated by 83 nucleotides
RPSI07_RS17870 and RPSI07_RS17875 overlap by 6 nucleotides
RPSI07_RS17855: RPSI07_RS17855 - polysaccharide deacetylase family protein, at 2,209,550 to 2,210,371
_RS17855
RPSI07_RS17860: RPSI07_RS17860 - YncE family protein, at 2,210,382 to 2,211,374
_RS17860
RPSI07_RS17865: RPSI07_RS17865 - ATP-dependent RNA helicase HrpA, at 2,211,508 to 2,215,488
_RS17865
RPSI07_RS17870: RPSI07_RS17870 - amino-acid N-acetyltransferase, at 2,215,572 to 2,216,969
_RS17870
RPSI07_RS17875: RPSI07_RS17875 - inositol 2-dehydrogenase, at 2,216,964 to 2,217,992
_RS17875
Group
Condition
RPSI07
_RS17855
RPSI07
_RS17860
RPSI07
_RS17865
RPSI07
_RS17870
RPSI07
_RS17875
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.3
N.D.
-4.0
-1.0
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.6
N.D.
-1.6
-1.9
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.4
N.D.
-2.8
-0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.5
N.D.
-2.1
-1.0
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.8
N.D.
-3.0
+0.8
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.2
N.D.
-1.5
-1.5
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.8
N.D.
-1.6
-1.1
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.6
N.D.
-3.9
+1.5
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.4
N.D.
-0.7
-1.6
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.8
N.D.
-0.5
-1.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix
-0.7
N.D.
-0.7
-1.4
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
N.D.
+0.2
-2.7
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.5
N.D.
-0.4
-1.6
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
N.D.
+0.0
-2.0
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.8
N.D.
-0.4
-0.8
+0.0
smsa no antibiotic control
SMSA no antibiotic control
-0.7
N.D.
-0.2
-1.2
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.7
N.D.
-3.1
+0.7
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+1.3
N.D.
-1.8
-0.5
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
N.D.
+0.0
-1.6
+0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.7
N.D.
-1.5
+0.3
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
N.D.
+0.0
-1.5
+0.9
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.1
N.D.
+0.3
-1.3
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+1.0
N.D.
-0.0
-1.3
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+1.0
N.D.
-3.5
+2.4
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
N.D.
+0.5
-1.5
+0.8
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.5
N.D.
-0.1
+1.4
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-1.0
N.D.
-0.0
+1.9
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+1.0
N.D.
+0.0
+1.0
-0.0
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.4
N.D.
+0.4
+1.5
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+1.0
N.D.
-0.0
+2.3
-0.0
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