Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS17795 and RPSI07_RS17800 are separated by 70 nucleotidesRPSI07_RS17800 and RPSI07_RS17805 are separated by 199 nucleotidesRPSI07_RS17805 and RPSI07_RS17810 are separated by 172 nucleotidesRPSI07_RS17810 and RPSI07_RS17815 are separated by 100 nucleotides RPSI07_RS17795: RPSI07_RS17795 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 2,196,941 to 2,197,822 _RS17795 RPSI07_RS17800: RPSI07_RS17800 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 2,197,893 to 2,199,209 _RS17800 RPSI07_RS17805: RPSI07_RS17805 - HAD family hydrolase, at 2,199,409 to 2,200,296 _RS17805 RPSI07_RS17810: RPSI07_RS17810 - hypothetical protein, at 2,200,469 to 2,200,795 _RS17810 RPSI07_RS17815: RPSI07_RS17815 - nitrogen regulation protein NR(I), at 2,200,896 to 2,202,407 _RS17815
Group Condition RPSI07_RS17795 RPSI07_RS17800 RPSI07_RS17805 RPSI07_RS17810 RPSI07_RS17815
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.6 -0.0 -0.5 -0.8 -3.0
smsa no antibiotic control SMSA no antibiotic control -0.4 +0.2 -0.3 -0.7 -1.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.5 +0.3 -0.2 -0.6 -1.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.4 +0.3 -0.2 -0.3 -1.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 -0.0 -0.1 -0.4 -1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 -0.0 -0.4 -1.1 -0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 +0.1 -0.2 -0.2 -1.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.3 +0.3 -0.5 -0.8 -0.5
m63_quarter_strength M63_quarter_strength +0.1 +0.1 -0.4 -0.4 -1.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.6 +0.2 -0.3 -0.3 -0.7
cpg CPG +0.5 +0.0 -0.3 -0.4 -1.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.3 -0.1 -0.0 -1.9
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.6 +0.4 -0.3 -0.4 -0.4
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.2 +0.0 +0.2 -0.7 -0.9
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.1 -0.1 -1.2 +0.6 -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.2 -0.1 -0.5 +1.0 -1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.6 +0.1 +0.4 +0.4 -1.0
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.9 -0.1 -0.2 -2.4 +1.2
m63_quarter_strength M63_quarter_strength +0.4 +0.2 -0.9 +0.5 -0.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.5 -0.1 +0.5 +0.6 -0.8
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.6 +0.6 -0.2 -1.4 +0.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.2 -0.0 -0.0 +1.1 -0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol +0.2 -0.2 -0.2 -0.4 +1.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -0.1 -0.0 +1.2 -0.8 +0.7
stress SMSA with Ralstonia_antibiotic_mix +0.3 +0.1 -0.1 -0.3 +1.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.6 -0.1 -0.3 +0.5 +0.7
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.2 -0.1 +0.9 +0.2 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.5 -0.1 +0.5 +0.4 +1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.5 +0.0 -0.2 +0.4 +1.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.3 -0.2 +1.0 +0.3 +1.0
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RPSI07_RS17795
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RPSI07_RS17800
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RPSI07_RS17810
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RPSI07_RS17815
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