Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS17235 and RPSI07_RS17240 are separated by 35 nucleotidesRPSI07_RS17240 and RPSI07_RS17245 are separated by 45 nucleotidesRPSI07_RS17245 and RPSI07_RS17250 are separated by 32 nucleotidesRPSI07_RS17250 and RPSI07_RS17255 are separated by 238 nucleotides RPSI07_RS17235: RPSI07_RS17235 - glutathione ABC transporter substrate-binding protein GsiB, at 2,072,548 to 2,074,101 _RS17235 RPSI07_RS17240: RPSI07_RS17240 - ABC transporter ATP-binding protein, at 2,074,137 to 2,076,014 _RS17240 RPSI07_RS17245: RPSI07_RS17245 - isoaspartyl peptidase/L-asparaginase, at 2,076,060 to 2,077,022 _RS17245 RPSI07_RS17250: RPSI07_RS17250 - MurR/RpiR family transcriptional regulator, at 2,077,055 to 2,078,053 _RS17250 RPSI07_RS17255: RPSI07_RS17255 - ABC transporter, at 2,078,292 to 2,080,238 _RS17255
Group Condition RPSI07_RS17235 RPSI07_RS17240 RPSI07_RS17245 RPSI07_RS17250 RPSI07_RS17255
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.3 -0.1 -1.2 +0.9 -2.4
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.1 -0.0 -0.4 +0.4 -2.3
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.1 +0.1 +0.1 +0.7 -2.6
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 -0.7 +0.2 -0.2 -0.3
stress SMSA with Ralstonia_antibiotic_mix +0.2 -0.3 -0.6 -0.2 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.4 -0.1 -0.2 -0.2 -0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol +0.3 -0.2 -0.5 -0.2 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol +0.3 +0.1 -0.5 -0.3 +0.2
cpg no stress control CPG no stress control +0.2 -0.1 -0.4 -0.2 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.3 +0.7 -0.7 -0.3 -0.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -0.1 -0.2 -0.3 +0.3 +0.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.2 +0.4 -0.6 +0.4 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.0 -0.2 +0.6 +0.2 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.3 -0.3 -0.2 +0.2 +0.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.2 +0.2 -0.3 +0.6 +0.1
cpg CPG -0.0 +0.8 -0.3 +0.2 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -0.1 +0.2 +0.4 +0.6 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.7 +0.1 -0.4 -0.0 +0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.3 +0.9 -0.2 -0.1 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.2 -0.1 +0.5 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 -0.2 +0.1 +0.2 +0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 +0.3 +0.3 -0.1 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.1 +0.3 +0.2 +0.2 +0.5
m63_quarter_strength M63_quarter_strength -0.1 +0.7 +0.4 +0.2 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +0.2 +0.3 +0.6 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 +0.4 +0.4 -0.1 +0.6
m63_quarter_strength M63_quarter_strength +0.2 +0.8 +0.1 +0.4 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.7 +0.5 +0.2 +0.4
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.6 +0.4 +0.6 +0.8 -0.3
m63_quarter_strength M63_quarter_strength -0.0 +1.7 +0.6 +0.7 +0.6
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RPSI07_RS17235
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RPSI07_RS17240
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RPSI07_RS17255
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