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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS17215 and RPSI07_RS17220 are separated by 6 nucleotides
RPSI07_RS17220 and RPSI07_RS17225 are separated by 1 nucleotides
RPSI07_RS17225 and RPSI07_RS17230 are separated by 10 nucleotides
RPSI07_RS17230 and RPSI07_RS17235 are separated by 64 nucleotides
RPSI07_RS17215: RPSI07_RS17215 - D-aminopeptidase, at 2,068,801 to 2,069,616
_RS17215
RPSI07_RS17220: RPSI07_RS17220 - S58 family peptidase, at 2,069,623 to 2,070,648
_RS17220
RPSI07_RS17225: RPSI07_RS17225 - glutathione ABC transporter permease GsiD, at 2,070,650 to 2,071,549
_RS17225
RPSI07_RS17230: RPSI07_RS17230 - glutathione ABC transporter permease GsiC, at 2,071,560 to 2,072,483
_RS17230
RPSI07_RS17235: RPSI07_RS17235 - glutathione ABC transporter substrate-binding protein GsiB, at 2,072,548 to 2,074,101
_RS17235
Group
Condition
RPSI07
_RS17215
RPSI07
_RS17220
RPSI07
_RS17225
RPSI07
_RS17230
RPSI07
_RS17235
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-3.2
+0.2
-0.5
+0.2
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-4.2
+0.2
+0.9
-0.5
+0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-1.0
-0.4
-0.5
-0.5
-0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-1.3
-0.0
+0.0
+0.4
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-2.3
+0.4
+0.9
+0.0
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-1.1
-0.5
+0.4
+0.2
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.9
-0.5
+0.3
+0.2
+0.2
smsa no antibiotic control
SMSA no antibiotic control
-1.9
-0.1
+0.3
+0.5
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-1.1
-0.2
+0.3
-0.0
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.9
-0.4
+0.4
+0.1
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-1.4
-0.1
+0.1
+1.0
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.7
-0.3
+0.4
+0.6
+0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+1.2
-0.2
-0.0
-0.5
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.9
-0.6
+0.8
+0.6
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.3
+1.1
-0.3
+0.1
-0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.8
+0.1
-0.6
+0.8
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.7
+0.5
-0.6
+0.4
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.4
-0.1
+0.6
+0.3
+0.7
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.8
-0.1
+0.5
-0.3
+0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+1.2
-0.4
+0.2
-0.1
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.7
+0.6
-0.5
+0.4
+0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+1.4
+0.1
-0.0
+0.4
-0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+1.7
-0.1
+0.1
+0.1
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.8
-0.0
+0.2
+0.7
+0.3
cpg
CPG
+1.0
+0.4
+0.1
+0.6
-0.0
m63_quarter_strength
M63_quarter_strength
-0.3
+0.6
+0.8
+1.6
-0.0
m63_quarter_strength
M63_quarter_strength
+1.1
+0.7
+0.7
+0.1
+0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.3
+0.0
+0.5
+1.3
+0.6
m63_quarter_strength
M63_quarter_strength
+1.3
+0.9
+0.0
+0.8
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+3.5
+0.0
+0.1
+0.0
-0.1
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