Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS16640 and RPSI07_RS16645 are separated by 252 nucleotidesRPSI07_RS16645 and RPSI07_RS16650 overlap by 4 nucleotidesRPSI07_RS16650 and RPSI07_RS16655 are separated by 106 nucleotidesRPSI07_RS16655 and RPSI07_RS16660 are separated by 272 nucleotides RPSI07_RS16640: RPSI07_RS16640 - KR domain-containing protein, at 1,916,185 to 1,923,345 _RS16640 RPSI07_RS16645: RPSI07_RS16645 - ABC transporter ATP-binding protein, at 1,923,598 to 1,925,343 _RS16645 RPSI07_RS16650: RPSI07_RS16650 - ABC transporter ATP-binding protein, at 1,925,340 to 1,927,199 _RS16650 RPSI07_RS16655: RPSI07_RS16655 - TonB-dependent receptor, at 1,927,306 to 1,929,381 _RS16655 RPSI07_RS16660: RPSI07_RS16660 - hybrid non-ribosomal peptide synthetase/type I polyketide synthase, at 1,929,654 to 1,942,466 _RS16660
Group Condition RPSI07_RS16640 RPSI07_RS16645 RPSI07_RS16650 RPSI07_RS16655 RPSI07_RS16660
m63_quarter_strength M63_quarter_strength -0.0 -0.8 -0.9 -0.6 -0.2
m63_quarter_strength M63_quarter_strength -0.1 -1.0 -0.7 -0.5 -0.1
m63_quarter_strength M63_quarter_strength +0.0 -0.8 -0.5 -0.5 +0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.1 -0.2 -0.4 -0.1 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.0 -0.2 -0.4 -0.1 +0.0
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.0 -0.4 -0.0 -0.1 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.1 -0.3 -0.6 +0.1 +0.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.1 -0.3 -0.3 +0.1 -0.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.0 -0.2 -0.4 +0.1 +0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.0 -0.2 -0.2 -0.2 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 -0.2 -0.3 -0.1 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.2 -0.7 +0.3 +0.1
cpg no stress control CPG no stress control +0.1 -0.0 -0.1 -0.1 +0.3
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 -0.0 -0.2 +0.4 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +0.1 -0.4 +0.3 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.2 +0.1 -0.3 +0.1 +0.3
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 -0.0 -0.1 +0.2 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.4 +0.2 -0.2 -0.1 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.1 +0.2 +0.2 +0.0 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.1 +0.2 -0.1 -0.0 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.2 +0.2 +0.1 +0.2 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.2 -0.1 -0.1 +0.2 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.1 +0.1 +0.3 -0.1 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.1 +0.2 -0.1 +0.2
smsa no antibiotic control SMSA no antibiotic control +0.2 +0.1 +0.6 -0.1 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 +0.1 +0.3 -0.0 +0.1
stress SMSA with Ralstonia_antibiotic_mix +0.2 +0.0 +0.6 +0.0 -0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.4 +0.1 +0.4 +0.0 +0.0
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.4 +0.2 +0.2 +0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 +0.4 +0.2 +0.4 +0.4
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RPSI07_RS16640
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RPSI07_RS16645
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RPSI07_RS16655
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RPSI07_RS16660
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