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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS16200 and RPSI07_RS16205 are separated by 51 nucleotides
RPSI07_RS16205 and RPSI07_RS16210 are separated by 87 nucleotides
RPSI07_RS16210 and RPSI07_RS16215 are separated by 203 nucleotides
RPSI07_RS16215 and RPSI07_RS16220 are separated by 127 nucleotides
RPSI07_RS16200: RPSI07_RS16200 - DUF1842 domain-containing protein, at 1,795,374 to 1,796,000
_RS16200
RPSI07_RS16205: RPSI07_RS16205 - DUF1842 domain-containing protein, at 1,796,052 to 1,796,633
_RS16205
RPSI07_RS16210: RPSI07_RS16210 - GDL motif peptide-associated radical SAM/SPASM maturase, at 1,796,721 to 1,798,196
_RS16210
RPSI07_RS16215: RPSI07_RS16215 - LysR family transcriptional regulator, at 1,798,400 to 1,799,320
_RS16215
RPSI07_RS16220: RPSI07_RS16220 - KR domain-containing protein, at 1,799,448 to 1,800,218
_RS16220
Group
Condition
RPSI07
_RS16200
RPSI07
_RS16205
RPSI07
_RS16210
RPSI07
_RS16215
RPSI07
_RS16220
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.5
-0.1
-1.0
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
-0.3
-0.1
-0.8
-0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.0
-1.0
-0.1
-0.5
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.0
-1.0
-0.0
+0.3
-0.4
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.1
-0.6
+0.2
+0.2
+0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
+0.3
-0.4
+0.1
-0.2
+0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.0
+0.2
+0.5
-0.6
+0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.1
-0.4
-0.0
+0.6
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.2
+0.2
+0.0
+0.6
-0.6
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.4
-0.3
-0.2
+0.4
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
+0.9
-0.2
-0.4
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.0
+0.2
-0.1
+0.7
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
-0.1
+0.2
+0.9
-0.5
stress
SMSA with Ralstonia_antibiotic_mix
+0.0
+0.3
+0.1
+0.7
-0.5
cpg no stress control
CPG no stress control
+0.3
-0.2
-0.0
+0.9
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.2
-0.0
+0.0
+0.8
-0.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.4
-0.6
-0.2
+0.6
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.2
+0.2
+0.0
+0.8
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.0
+0.1
-0.1
+1.0
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.1
+0.8
-0.2
-0.2
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.1
+0.0
-0.1
+0.9
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.1
-0.2
-0.1
+1.2
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.3
+0.1
+0.0
+0.9
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.0
-0.0
-0.2
+0.6
+0.7
smsa no antibiotic control
SMSA no antibiotic control
+0.2
+0.5
+0.1
+0.9
-0.3
m63_quarter_strength
M63_quarter_strength
+0.3
+0.2
+0.2
+0.8
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.0
+1.3
+0.0
+0.6
-0.5
m63_quarter_strength
M63_quarter_strength
+0.3
+0.4
+0.4
+0.4
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.2
+0.3
+0.2
+0.4
+0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.2
+0.3
+0.2
+0.6
+0.6
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