Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS16085 and RPSI07_RS16090 are separated by 0 nucleotidesRPSI07_RS16090 and RPSI07_RS16095 are separated by 167 nucleotidesRPSI07_RS16095 and RPSI07_RS16100 are separated by 78 nucleotidesRPSI07_RS16100 and RPSI07_RS16105 are separated by 103 nucleotides RPSI07_RS16085: RPSI07_RS16085 - DUF1501 domain-containing protein, at 1,764,879 to 1,766,063 _RS16085 RPSI07_RS16090: RPSI07_RS16090 - squalene synthase HpnD, at 1,766,064 to 1,766,897 _RS16090 RPSI07_RS16095: RPSI07_RS16095 - efflux RND transporter periplasmic adaptor subunit, at 1,767,065 to 1,768,273 _RS16095 RPSI07_RS16100: RPSI07_RS16100 - AcrB/AcrD/AcrF family protein, at 1,768,352 to 1,771,471 _RS16100 RPSI07_RS16105: RPSI07_RS16105 - tRNA-Leu, at 1,771,575 to 1,771,661 _RS16105
Group Condition RPSI07_RS16085 RPSI07_RS16090 RPSI07_RS16095 RPSI07_RS16100 RPSI07_RS16105
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.2 -0.4 -1.6 -1.7 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 -1.1 -1.4 -1.7 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.7 -0.7 -1.8 -1.5 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 +0.2 -1.9 -0.9 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 -0.4 -1.4 -1.4 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 -0.2 -1.3 -1.3 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 -0.5 -0.9 -1.5 N.D.
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 -0.3 -1.9 -0.8 N.D.
stress SMSA with Ralstonia_antibiotic_mix +0.4 +0.2 -2.5 -0.7 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.3 -0.9 -1.0 -0.4 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -0.4 -0.7 -1.5 +0.1 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.2 -0.4 -0.9 -0.9 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.9 -0.2 -1.1 -2.0 N.D.
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.4 +0.1 -0.6 -1.4 N.D.
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 +0.3 -1.2 -1.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.5 -0.3 -1.7 -0.6 N.D.
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.3 +0.1 -1.8 -0.6 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.0 -0.2 -1.3 -1.4 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.4 +0.1 -1.5 -0.8 N.D.
smsa no antibiotic control SMSA no antibiotic control +0.8 -0.6 -0.9 -0.9 N.D.
cpg CPG +0.3 -0.8 -1.3 +0.4 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +1.0 -0.0 -1.2 -1.0 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.7 -0.4 -0.2 -1.3 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +1.1 -0.5 -0.6 -1.0 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +1.1 -0.2 -0.5 -0.9 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +1.3 -0.1 -0.5 -1.2 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +1.1 +0.2 -0.4 -1.0 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.7 +0.7 -0.5 -0.7 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.8 +0.0 +0.5 +1.6 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.9 -0.0 +0.8 +0.9 N.D.
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RPSI07_RS16085
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