Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS15460 and RPSI07_RS15465 are separated by 80 nucleotidesRPSI07_RS15465 and RPSI07_RS15470 are separated by 86 nucleotidesRPSI07_RS15470 and RPSI07_RS15475 are separated by 87 nucleotidesRPSI07_RS15475 and RPSI07_RS15480 overlap by 4 nucleotides RPSI07_RS15460: RPSI07_RS15460 - oxidoreductase, at 1,632,272 to 1,633,078 _RS15460 RPSI07_RS15465: RPSI07_RS15465 - TolC family protein, at 1,633,159 to 1,634,619 _RS15465 RPSI07_RS15470: RPSI07_RS15470 - TetR/AcrR family transcriptional regulator, at 1,634,706 to 1,635,320 _RS15470 RPSI07_RS15475: RPSI07_RS15475 - efflux RND transporter periplasmic adaptor subunit, at 1,635,408 to 1,636,523 _RS15475 RPSI07_RS15480: RPSI07_RS15480 - AcrB/AcrD/AcrF family protein, at 1,636,520 to 1,639,642 _RS15480
Group Condition RPSI07_RS15460 RPSI07_RS15465 RPSI07_RS15470 RPSI07_RS15475 RPSI07_RS15480
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 -0.2 -1.6 -0.2 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 -0.3 -1.5 +0.1 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 +0.1 -1.6 -0.0 +0.1
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.1 -1.6 -0.1 +0.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.2 -0.1 -0.6 -0.2 -0.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.0 +0.0 -0.7 -0.4 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.1 -0.3 -0.6 +0.0 -0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.0 -0.0 -0.7 -0.2 -0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.2 +0.0 -1.5 +0.1 +0.0
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.0 -1.6 -0.0 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.1 -0.1 -1.0 -0.1 -0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.1 -0.1 -0.7 -0.3 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.0 +0.0 -0.5 -0.5 +0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 -0.1 -1.6 +0.1 +0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.5 -0.2 +0.5 -0.4 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 -0.0 -0.9 +0.2 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 -0.2 -0.6 -0.1 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 +0.2 -1.1 +0.3 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 +0.2 -0.7 +0.0 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 -0.3 -0.5 +0.3 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.3 -1.0 +0.1 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 +0.2 -0.7 +0.1 +0.2
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.0 -0.0 +0.8 -0.4 -0.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.5 +0.3 -0.9 +0.3 +0.3
m63_quarter_strength M63_quarter_strength -0.1 -0.3 +0.3 +0.4 +0.2
m63_quarter_strength M63_quarter_strength -0.3 -0.0 +0.4 +0.3 +0.2
m63_quarter_strength M63_quarter_strength +0.1 +0.2 +0.3 +0.5 +0.2
cpg CPG +0.1 -0.2 +1.3 -0.1 +0.2
cpg CPG -0.1 -0.1 +1.3 +0.2 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.3 +0.1 +0.6 +0.3 +0.1
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RPSI07_RS15460
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RPSI07_RS15465
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RPSI07_RS15475
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RPSI07_RS15480
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