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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS15390 and RPSI07_RS15395 are separated by 887 nucleotides
RPSI07_RS15395 and RPSI07_RS15400 are separated by 42 nucleotides
RPSI07_RS15400 and RPSI07_RS15405 are separated by 159 nucleotides
RPSI07_RS15405 and RPSI07_RS15410 overlap by 4 nucleotides
RPSI07_RS15390: RPSI07_RS15390 - hypothetical protein, at 1,616,421 to 1,616,693
_RS15390
RPSI07_RS15395: RPSI07_RS15395 - UPF0182 family protein, at 1,617,581 to 1,620,334
_RS15395
RPSI07_RS15400: RPSI07_RS15400 - LysR family transcriptional regulator, at 1,620,377 to 1,621,270
_RS15400
RPSI07_RS15405: RPSI07_RS15405 - ABC transporter permease, at 1,621,430 to 1,622,293
_RS15405
RPSI07_RS15410: RPSI07_RS15410 - ABC transporter ATP-binding protein, at 1,622,290 to 1,623,336
_RS15410
Group
Condition
RPSI07
_RS15390
RPSI07
_RS15395
RPSI07
_RS15400
RPSI07
_RS15405
RPSI07
_RS15410
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
-0.1
-0.3
-0.4
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
N.D.
-0.1
-0.2
-0.2
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
N.D.
-0.1
-0.1
-0.2
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
N.D.
-0.0
-0.3
+0.1
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-0.1
+0.2
-0.3
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
+0.2
+0.4
+0.2
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-0.0
+0.1
-0.1
+0.6
cpg
CPG
N.D.
-0.1
+0.3
+0.1
+0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
-0.0
+0.3
-0.0
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
N.D.
+0.0
+0.3
-0.1
+0.4
m63_quarter_strength
M63_quarter_strength
N.D.
-0.0
+0.2
+0.1
+0.5
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
N.D.
+0.0
+0.2
+0.3
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
N.D.
+0.2
+0.0
+0.3
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+0.1
+0.1
+0.5
+0.1
cpg
CPG
N.D.
+0.1
+0.2
+0.1
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+0.2
-0.0
+0.5
+0.1
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+0.2
+0.1
+0.2
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
N.D.
+0.2
+0.4
+0.2
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
N.D.
+0.1
+0.4
+0.2
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
N.D.
+0.1
+0.2
+0.3
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
N.D.
+0.2
+0.3
+0.3
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
N.D.
+0.1
+0.3
+0.4
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
N.D.
+0.1
+0.3
+0.6
+0.0
stress
SMSA with Ralstonia_antibiotic_mix
N.D.
+0.1
+0.4
+0.3
+0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
N.D.
+0.2
+0.4
+0.3
+0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
+0.1
+0.7
+0.0
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
N.D.
+0.2
+0.4
+0.2
+0.4
smsa no antibiotic control
SMSA no antibiotic control
N.D.
+0.1
+0.4
+0.4
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
N.D.
+0.2
+0.3
+0.7
+0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
+0.3
+0.5
+0.4
+0.4
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