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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS14870 and RPSI07_RS14875 are separated by 83 nucleotides
RPSI07_RS14875 and RPSI07_RS14880 are separated by 163 nucleotides
RPSI07_RS14880 and RPSI07_RS14885 are separated by 21 nucleotides
RPSI07_RS14885 and RPSI07_RS14890 are separated by 83 nucleotides
RPSI07_RS14870: RPSI07_RS14870 - membrane protein, at 1,506,148 to 1,506,687
_RS14870
RPSI07_RS14875: RPSI07_RS14875 - EamA/RhaT family transporter, at 1,506,771 to 1,507,781
_RS14875
RPSI07_RS14880: RPSI07_RS14880 - acetate--CoA ligase, at 1,507,945 to 1,509,927
_RS14880
RPSI07_RS14885: RPSI07_RS14885 - cation acetate symporter, at 1,509,949 to 1,512,015
_RS14885
RPSI07_RS14890: RPSI07_RS14890 - tRNA-Ser, at 1,512,099 to 1,512,189
_RS14890
Group
Condition
RPSI07
_RS14870
RPSI07
_RS14875
RPSI07
_RS14880
RPSI07
_RS14885
RPSI07
_RS14890
m63_quarter_strength
M63_quarter_strength
-0.0
-1.0
-0.4
-0.1
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.4
-0.3
+0.0
-0.2
N.D.
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.3
+0.2
-0.2
-0.4
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.1
-0.6
-0.2
-0.1
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.6
-0.0
-0.0
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
-0.0
+0.0
-0.1
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.1
-0.2
-0.3
-0.2
N.D.
cpg
CPG
-0.0
-0.3
-0.0
-0.3
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.5
+0.2
-0.0
-0.0
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.4
-0.1
+0.2
-0.0
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
+0.1
-0.2
-0.3
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
-0.4
+0.2
+0.1
+0.0
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.3
+0.1
+0.1
N.D.
m63_quarter_strength
M63_quarter_strength
+0.2
+0.0
-0.2
-0.1
N.D.
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.1
+0.4
-0.4
-0.2
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.5
+0.4
+0.0
+0.0
N.D.
m63_quarter_strength
M63_quarter_strength
+0.0
+0.3
-0.4
-0.0
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.3
+0.4
-0.1
+0.1
N.D.
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
+0.2
+0.2
+0.1
-0.2
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.3
-0.2
+0.1
+0.1
N.D.
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-0.2
+0.5
-0.0
-0.0
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
-0.3
+0.1
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.4
+0.0
-0.1
+0.2
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.0
+0.4
+0.2
-0.0
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.4
+0.2
+0.2
-0.0
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.1
+0.6
+0.1
-0.0
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.1
+0.4
+0.2
+0.1
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.1
+0.7
+0.2
-0.0
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.0
+0.9
+0.3
-0.1
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.0
+1.1
+0.1
+0.2
N.D.
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