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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS14500 and RPSI07_RS14505 are separated by 1111 nucleotides
RPSI07_RS14505 and RPSI07_RS14510 overlap by 4 nucleotides
RPSI07_RS14510 and RPSI07_RS14515 are separated by 140 nucleotides
RPSI07_RS14515 and RPSI07_RS14520 are separated by 27 nucleotides
RPSI07_RS14500: RPSI07_RS14500 - urease accessory protein UreG, at 1,432,323 to 1,432,955
_RS14500
RPSI07_RS14505: RPSI07_RS14505 - fatty acid desaturase, at 1,434,067 to 1,435,008
_RS14505
RPSI07_RS14510: RPSI07_RS14510 - amino acid transporter, at 1,435,005 to 1,435,613
_RS14510
RPSI07_RS14515: RPSI07_RS14515 - hypothetical protein, at 1,435,754 to 1,436,053
_RS14515
RPSI07_RS14520: RPSI07_RS14520 - isoprenylcysteine carboxylmethyltransferase family protein, at 1,436,081 to 1,436,740
_RS14520
Group
Condition
RPSI07
_RS14500
RPSI07
_RS14505
RPSI07
_RS14510
RPSI07
_RS14515
RPSI07
_RS14520
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
+0.4
-0.1
-1.2
-0.4
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-0.4
+0.1
-0.2
+0.4
-1.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.2
+0.4
-0.1
-1.0
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
+0.0
+0.3
+0.3
-1.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.0
+0.1
+0.5
-0.5
-0.5
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-0.1
+0.2
+0.2
+0.3
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.1
-0.0
+0.2
+0.8
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.4
-0.1
+0.4
+0.4
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.0
+0.1
+0.5
+0.6
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.2
-0.2
-0.0
-0.5
+0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.0
+0.1
+0.1
-0.7
+0.8
stress
SMSA with Ralstonia_antibiotic_mix
-0.0
-0.1
+0.4
+0.5
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.2
-0.1
+0.1
-0.5
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.3
-0.1
-0.2
-0.4
+0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
-0.1
-0.2
-0.3
+0.6
smsa no antibiotic control
SMSA no antibiotic control
-0.0
+0.0
-0.0
-0.7
+1.1
cpg
CPG
+0.2
+0.2
+0.6
-0.4
-0.2
stress
SMSA with Ralstonia_antibiotic_mix
+0.0
-0.0
-0.3
-0.4
+1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
+0.2
-0.3
-0.6
+1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.1
+0.3
-0.2
-0.5
+1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.0
+0.2
+0.6
+0.9
-1.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.1
+0.3
-0.5
+0.5
smsa no antibiotic control
SMSA no antibiotic control
+0.2
+0.1
+0.3
+0.6
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.3
+0.1
+0.3
+0.4
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.4
-0.1
+0.4
+0.7
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.2
+0.0
+0.9
+0.5
-0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.2
+0.1
+0.4
+0.8
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.1
-0.1
-0.1
-0.2
+1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.1
-0.1
+0.3
+0.7
+0.8
m63_quarter_strength
M63_quarter_strength
+0.3
+0.2
+0.3
+0.2
+0.9
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