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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS14055 and RPSI07_RS14060 are separated by 133 nucleotides
RPSI07_RS14060 and RPSI07_RS14065 overlap by 4 nucleotides
RPSI07_RS14065 and RPSI07_RS14070 are separated by 42 nucleotides
RPSI07_RS14070 and RPSI07_RS14075 are separated by 4 nucleotides
RPSI07_RS14055: RPSI07_RS14055 - porin, at 1,343,946 to 1,345,013
_RS14055
RPSI07_RS14060: RPSI07_RS14060 - OHCU decarboxylase, at 1,345,147 to 1,345,668
_RS14060
RPSI07_RS14065: RPSI07_RS14065 - allantoinase PuuE, at 1,345,665 to 1,346,627
_RS14065
RPSI07_RS14070: RPSI07_RS14070 - 8-oxoguanine deaminase, at 1,346,670 to 1,348,094
_RS14070
RPSI07_RS14075: RPSI07_RS14075 - purine permease, at 1,348,099 to 1,349,505
_RS14075
Group
Condition
RPSI07
_RS14055
RPSI07
_RS14060
RPSI07
_RS14065
RPSI07
_RS14070
RPSI07
_RS14075
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
N.D.
-0.3
-0.9
-0.4
-0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
N.D.
-0.1
-1.2
-0.6
+0.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
-0.0
-1.3
-0.5
-0.0
cpg
CPG
N.D.
-0.1
-0.6
-0.2
-0.9
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
-0.5
-1.1
-0.5
+0.6
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
N.D.
-0.5
-0.4
-0.3
-0.3
stress
SMSA with Ralstonia_antibiotic_mix
N.D.
+0.1
-0.7
+0.0
-0.9
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
-0.2
-1.2
-0.3
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
N.D.
+0.1
-0.8
+0.2
-1.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
N.D.
-0.5
-1.1
-0.2
+0.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
N.D.
-0.3
-0.9
-0.3
+0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
N.D.
-0.6
-1.1
-0.2
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
N.D.
+0.3
-1.2
+0.0
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
N.D.
+0.1
-0.7
+0.0
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
N.D.
+0.2
-1.0
-0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
N.D.
-0.4
-0.9
+0.2
-0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
N.D.
-0.4
-0.7
-0.3
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
N.D.
+0.4
-1.2
+0.1
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
N.D.
+0.1
-0.9
+0.1
-0.5
smsa no antibiotic control
SMSA no antibiotic control
N.D.
+0.2
-1.1
+0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
N.D.
+0.1
-0.7
+0.1
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
N.D.
+0.2
-1.1
+0.1
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
+0.4
-0.4
-0.3
-0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.5
-0.5
-0.2
+0.5
m63_quarter_strength
M63_quarter_strength
N.D.
-0.2
+0.4
-0.2
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
N.D.
-0.6
-0.1
-0.2
+0.6
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
+0.4
-0.0
+0.4
-0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-0.4
-0.4
+0.1
+0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
-0.8
+0.4
-0.1
+0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
N.D.
-0.4
-0.3
+0.1
+1.0
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