Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS13675 and RPSI07_RS13680 are separated by 147 nucleotidesRPSI07_RS13680 and RPSI07_RS13685 are separated by 83 nucleotidesRPSI07_RS13685 and RPSI07_RS13690 are separated by 180 nucleotidesRPSI07_RS13690 and RPSI07_RS13695 are separated by 70 nucleotides RPSI07_RS13675: RPSI07_RS13675 - oxygen-dependent coproporphyrinogen oxidase, at 1,258,314 to 1,259,222 _RS13675 RPSI07_RS13680: RPSI07_RS13680 - phosphoribosylamine--glycine ligase, at 1,259,370 to 1,260,638 _RS13680 RPSI07_RS13685: RPSI07_RS13685 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,260,722 to 1,261,447 _RS13685 RPSI07_RS13690: RPSI07_RS13690 - DUF853 domain-containing protein, at 1,261,628 to 1,263,217 _RS13690 RPSI07_RS13695: RPSI07_RS13695 - uracil phosphoribosyltransferase, at 1,263,288 to 1,263,938 _RS13695
Group Condition RPSI07_RS13675 RPSI07_RS13680 RPSI07_RS13685 RPSI07_RS13690 RPSI07_RS13695
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. -0.3 -1.0
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. -0.5 -0.2
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. N.D. N.D. -0.3 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -0.3 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -0.1 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. N.D. N.D. -0.4 -0.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days N.D. N.D. N.D. +0.3 -0.4
stress SMSA with Ralstonia_antibiotic_mix N.D. N.D. N.D. -0.4 +0.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. N.D. N.D. +0.3 -0.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days N.D. N.D. N.D. -0.5 +0.5
m63_quarter_strength M63_quarter_strength N.D. N.D. N.D. +0.7 -0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. N.D. N.D. -0.3 +0.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. N.D. N.D. -0.4 +0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -0.2 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol N.D. N.D. N.D. -0.6 +0.9
cpg no stress control CPG no stress control N.D. N.D. N.D. +0.5 -0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. N.D. N.D. -0.1 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. N.D. N.D. -0.5 +1.1
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. N.D. N.D. -0.3 +0.9
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. N.D. N.D. +0.4 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. N.D. N.D. +0.3 +0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. N.D. N.D. +0.8 +0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. N.D. N.D. +0.9 +0.1
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days N.D. N.D. N.D. -0.2 +1.1
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. N.D. N.D. -0.2 +1.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin N.D. N.D. N.D. +1.1 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. +0.9 +0.5
smsa no antibiotic control SMSA no antibiotic control N.D. N.D. N.D. -0.4 +1.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. +0.8 +0.8
smsa no antibiotic control SMSA no antibiotic control N.D. N.D. N.D. +0.4 +1.3
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