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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS13620 and RPSI07_RS13625 are separated by 39 nucleotides
RPSI07_RS13625 and RPSI07_RS13630 are separated by 240 nucleotides
RPSI07_RS13630 and RPSI07_RS13635 are separated by 51 nucleotides
RPSI07_RS13635 and RPSI07_RS13640 are separated by 55 nucleotides
RPSI07_RS13620: RPSI07_RS13620 - glycosyl transferase, at 1,248,460 to 1,249,380
_RS13620
RPSI07_RS13625: RPSI07_RS13625 - glycosyltransferase family 2 protein, at 1,249,420 to 1,250,190
_RS13625
RPSI07_RS13630: RPSI07_RS13630 - glycosyl transferase, at 1,250,431 to 1,251,291
_RS13630
RPSI07_RS13635: RPSI07_RS13635 - lipid A export permease/ATP-binding protein MsbA, at 1,251,343 to 1,253,121
_RS13635
RPSI07_RS13640: RPSI07_RS13640 - alkylhydroperoxidase, at 1,253,177 to 1,253,782
_RS13640
Group
Condition
RPSI07
_RS13620
RPSI07
_RS13625
RPSI07
_RS13630
RPSI07
_RS13635
RPSI07
_RS13640
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-3.4
-5.0
-2.7
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-2.6
-5.1
-2.5
N.D.
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-1.5
-5.0
-3.3
N.D.
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-2.7
-4.0
-3.2
N.D.
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-3.0
-4.2
-2.5
N.D.
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-2.2
-5.3
-2.0
N.D.
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-1.9
-4.3
-2.6
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-1.9
-4.3
-2.1
N.D.
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-1.8
-3.8
-2.3
N.D.
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-2.3
-3.4
-2.3
N.D.
+0.0
stress
SMSA with Ralstonia_antibiotic_mix
-2.2
-3.8
-1.8
N.D.
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.7
-3.8
-2.9
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-1.7
-3.1
-2.2
N.D.
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-1.2
-3.2
-1.8
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.6
-2.6
-2.7
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.3
-4.6
-2.1
N.D.
+0.5
stress
SMSA with Ralstonia_antibiotic_mix
-0.8
-3.6
-0.9
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-1.0
-1.9
-1.8
N.D.
+0.1
stress
SMSA with Ralstonia_antibiotic_mix
+0.5
-3.2
-1.4
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.4
-2.8
-1.9
N.D.
-0.3
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-1.1
-2.0
-1.2
N.D.
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-1.0
-2.0
-1.6
N.D.
+0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-1.0
-2.0
-0.6
N.D.
-0.1
cpg
CPG
+0.2
-1.6
-1.5
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.6
-1.4
-1.4
N.D.
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+1.2
-3.2
-1.8
N.D.
+1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
-1.7
-1.1
N.D.
+1.5
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.7
-0.8
-0.7
N.D.
+3.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.9
-1.1
-0.8
N.D.
+2.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.8
-0.8
-0.4
N.D.
+1.9
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