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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS13060 and RPSI07_RS13065 are separated by 35 nucleotides
RPSI07_RS13065 and RPSI07_RS13070 are separated by 701 nucleotides
RPSI07_RS13070 and RPSI07_RS13075 are separated by 3 nucleotides
RPSI07_RS13075 and RPSI07_RS13080 are separated by 110 nucleotides
RPSI07_RS13060: RPSI07_RS13060 - hypothetical protein, at 1,116,465 to 1,117,688
_RS13060
RPSI07_RS13065: RPSI07_RS13065 - DUF2130 domain-containing protein, at 1,117,724 to 1,119,133
_RS13065
RPSI07_RS13070: RPSI07_RS13070 - hypothetical protein, at 1,119,835 to 1,120,110
_RS13070
RPSI07_RS13075: RPSI07_RS13075 - hypothetical protein, at 1,120,114 to 1,120,380
_RS13075
RPSI07_RS13080: RPSI07_RS13080 - argininosuccinate lyase, at 1,120,491 to 1,121,906
_RS13080
Group
Condition
RPSI07
_RS13060
RPSI07
_RS13065
RPSI07
_RS13070
RPSI07
_RS13075
RPSI07
_RS13080
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
-0.4
-0.5
-0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
-0.1
-0.3
-0.2
-0.3
N.D.
cpg
CPG
-0.1
-0.3
-0.0
-0.3
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.0
-0.3
+0.0
-0.5
N.D.
m63_quarter_strength
M63_quarter_strength
-0.1
-0.4
-0.2
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
+0.0
-0.4
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
-0.5
+0.2
-0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.1
-0.5
+0.2
-0.3
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.2
-0.3
-0.3
-0.1
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.1
-0.3
+0.2
-0.4
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.1
-0.2
-0.0
-0.3
N.D.
smsa no antibiotic control
SMSA no antibiotic control
+0.2
+0.1
-0.3
-0.3
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.2
-0.1
-0.1
-0.3
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.2
-0.1
+0.3
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.1
-0.0
+0.2
-0.4
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.2
+0.0
-0.3
-0.1
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.3
+0.2
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.0
-0.5
+0.2
+0.3
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.1
-0.2
+0.3
-0.2
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
+0.2
+0.3
-0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.0
-0.4
+0.2
+0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
-0.0
-0.3
+0.2
+0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.1
-0.2
+0.4
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
-0.0
+0.2
+0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.1
-0.2
+0.3
+0.5
N.D.
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.1
+0.3
-0.4
+0.6
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.0
-0.1
+0.3
+0.3
N.D.
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+0.3
+0.1
+0.3
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.3
+0.2
+0.3
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.1
+0.2
+0.6
+0.2
N.D.
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