Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS12645 and RPSI07_RS12650 are separated by 179 nucleotidesRPSI07_RS12650 and RPSI07_RS12655 overlap by 4 nucleotidesRPSI07_RS12655 and RPSI07_RS12660 are separated by 6 nucleotidesRPSI07_RS12660 and RPSI07_RS12665 are separated by 162 nucleotides RPSI07_RS12645: RPSI07_RS12645 - aminotransferase, at 1,028,292 to 1,029,482 _RS12645 RPSI07_RS12650: RPSI07_RS12650 - quinolinate synthase NadA, at 1,029,662 to 1,030,810 _RS12650 RPSI07_RS12655: RPSI07_RS12655 - nicotinate-nucleotide diphosphorylase (carboxylating), at 1,030,807 to 1,031,694 _RS12655 RPSI07_RS12660: RPSI07_RS12660 - L-aspartate oxidase, at 1,031,701 to 1,033,302 _RS12660 RPSI07_RS12665: RPSI07_RS12665 - 50S ribosomal protein L33, at 1,033,465 to 1,033,635 _RS12665
Group Condition RPSI07_RS12645 RPSI07_RS12650 RPSI07_RS12655 RPSI07_RS12660 RPSI07_RS12665
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -1.6 -1.3 -0.3 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.4 -2.5 -0.0 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -1.6 -1.1 -0.2 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.4 -2.0 +0.2 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -1.2 -0.6 +0.2 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.9 -0.8 +0.1 N.D.
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. -0.6 -0.5 -0.2 N.D.
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. -0.8 -0.5 +0.0 N.D.
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. -0.6 -0.4 +0.0 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.6 -0.1 -0.0 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. -0.7 -0.1 +0.0 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.7 -0.3 +0.3 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet N.D. -0.6 -0.2 +0.1 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.6 -0.5 +0.5 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.3 -0.4 +0.1 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. -0.0 -0.8 +0.2 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -0.3 -0.4 +0.3 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.3 +0.2 +0.3 N.D.
cpg CPG N.D. -0.3 +0.8 -0.1 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -0.3 +0.8 -0.0 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. +0.4 +0.3 -0.1 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days N.D. -0.2 +0.6 +0.2 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin N.D. +0.4 +0.5 -0.1 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. +0.1 +0.8 -0.1 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. +0.2 +0.6 +0.1 N.D.
smsa no antibiotic control SMSA no antibiotic control N.D. +0.2 +0.5 +0.1 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. -0.3 +0.8 +0.4 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days N.D. +0.1 +0.7 +0.1 N.D.
m63_quarter_strength M63_quarter_strength N.D. +0.3 +0.5 +0.3 N.D.
m63_quarter_strength M63_quarter_strength N.D. +0.3 +0.6 +0.2 N.D.
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