Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS11600 and RPSI07_RS11605 are separated by 77 nucleotidesRPSI07_RS11605 and RPSI07_RS11610 are separated by 121 nucleotidesRPSI07_RS11610 and RPSI07_RS11615 are separated by 105 nucleotidesRPSI07_RS11615 and RPSI07_RS11620 overlap by 10 nucleotides RPSI07_RS11600: RPSI07_RS11600 - protein translocase subunit SecF, at 799,514 to 800,482 _RS11600 RPSI07_RS11605: RPSI07_RS11605 - protein translocase subunit SecD, at 800,560 to 802,440 _RS11605 RPSI07_RS11610: RPSI07_RS11610 - preprotein translocase subunit YajC, at 802,562 to 802,897 _RS11610 RPSI07_RS11615: RPSI07_RS11615 - tRNA guanosine(34) transglycosylase Tgt, at 803,003 to 804,166 _RS11615 RPSI07_RS11620: RPSI07_RS11620 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 804,157 to 805,227 _RS11620
Group Condition RPSI07_RS11600 RPSI07_RS11605 RPSI07_RS11610 RPSI07_RS11615 RPSI07_RS11620
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. -3.6 -3.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. N.D. N.D. -1.5 -2.8
smsa no antibiotic control SMSA no antibiotic control N.D. N.D. N.D. -2.6 -1.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. N.D. N.D. -1.3 -2.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. N.D. N.D. -2.6 -1.0
cpg no stress control CPG no stress control N.D. N.D. N.D. -1.6 -1.7
m63_quarter_strength M63_quarter_strength N.D. N.D. N.D. -2.1 -1.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -1.2 -1.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -0.8 -2.3
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. N.D. N.D. -0.5 -2.5
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -1.1 -1.9
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. N.D. N.D. -2.1 -0.9
cpg no stress control CPG no stress control N.D. N.D. N.D. -1.4 -1.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -1.6 -1.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -1.1 -1.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. N.D. N.D. -1.3 -1.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet N.D. N.D. N.D. -1.5 -1.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. N.D. N.D. -1.2 -1.5
cpg CPG N.D. N.D. N.D. -1.1 -1.7
smsa no antibiotic control SMSA no antibiotic control N.D. N.D. N.D. -1.7 -1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. N.D. N.D. -1.4 -1.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. N.D. N.D. -1.7 -0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. N.D. N.D. -1.0 -1.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -0.7 -1.7
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. N.D. N.D. -0.3 -2.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. N.D. N.D. -1.0 -1.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -1.1 -1.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days N.D. N.D. N.D. -0.9 -1.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. -0.9 -1.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. N.D. N.D. -1.5 -0.8
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