Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS11295 and RPSI07_RS11300 overlap by 4 nucleotidesRPSI07_RS11300 and RPSI07_RS11305 are separated by 19 nucleotidesRPSI07_RS11305 and RPSI07_RS11310 are separated by 150 nucleotidesRPSI07_RS11310 and RPSI07_RS11315 are separated by 37 nucleotides RPSI07_RS11295: RPSI07_RS11295 - energy transducer TonB, at 733,034 to 733,948 _RS11295 RPSI07_RS11300: RPSI07_RS11300 - shikimate dehydrogenase, at 733,945 to 734,865 _RS11300 RPSI07_RS11305: RPSI07_RS11305 - monofunctional biosynthetic peptidoglycan transglycosylase, at 734,885 to 735,589 _RS11305 RPSI07_RS11310: RPSI07_RS11310 - HARPIN, at 735,740 to 736,870 _RS11310 RPSI07_RS11315: RPSI07_RS11315 - magnesium and cobalt transport protein CorA, at 736,908 to 737,870 _RS11315
Group Condition RPSI07_RS11295 RPSI07_RS11300 RPSI07_RS11305 RPSI07_RS11310 RPSI07_RS11315
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 -2.7 -0.2 -0.3 -0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.2 -2.6 -0.6 +0.0 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 -2.9 -0.3 +0.2 -0.3
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -2.4 -0.8 -0.2 -0.1 +0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.9 -1.0 -0.2 -0.1 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 -1.9 +0.1 +0.0 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.2 -2.3 +0.1 +0.0 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 -0.6 -1.3 +0.0 -0.5
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.6 -1.2 +0.1 +0.0 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.4 -1.4 -0.2 +0.1 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.9 -1.0 +0.1 +0.1 -0.2
m63_quarter_strength M63_quarter_strength -0.6 -1.3 +0.0 -0.2 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 -1.7 +0.1 -0.1 +0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.2 -1.2 -0.0 +0.2 -0.4
m63_quarter_strength M63_quarter_strength -0.7 -0.7 +0.1 -0.2 +0.1
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.7 -0.6 +0.2 +0.1 -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.5 -0.3 -0.7 +0.0 +0.4
m63_quarter_strength M63_quarter_strength -0.2 -1.1 +0.3 +0.3 -0.2
stress SMSA with Ralstonia_antibiotic_mix -0.9 -0.1 +0.3 +0.3 -0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.8 -0.5 -1.0 +0.4 -0.6
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.3 -0.8 -0.1 +0.3 +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -1.1 -0.2 +0.4 -0.1 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.6 -0.4 +0.4 -0.2 +0.3
cpg no stress control CPG no stress control +1.0 -0.4 -0.8 -0.1 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.6 -0.5 +0.6 -0.0 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.8 -0.1 -0.6 -0.2 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.4 +0.2 +0.5 +0.2 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.4 +0.0 +0.8 +0.3 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +2.1 +0.0 -0.6 -0.2 +0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +3.2 +0.1 +0.5 +0.2 -0.9
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