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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS11295 and RPSI07_RS11300 overlap by 4 nucleotides
RPSI07_RS11300 and RPSI07_RS11305 are separated by 19 nucleotides
RPSI07_RS11305 and RPSI07_RS11310 are separated by 150 nucleotides
RPSI07_RS11310 and RPSI07_RS11315 are separated by 37 nucleotides
RPSI07_RS11295: RPSI07_RS11295 - energy transducer TonB, at 733,034 to 733,948
_RS11295
RPSI07_RS11300: RPSI07_RS11300 - shikimate dehydrogenase, at 733,945 to 734,865
_RS11300
RPSI07_RS11305: RPSI07_RS11305 - monofunctional biosynthetic peptidoglycan transglycosylase, at 734,885 to 735,589
_RS11305
RPSI07_RS11310: RPSI07_RS11310 - HARPIN, at 735,740 to 736,870
_RS11310
RPSI07_RS11315: RPSI07_RS11315 - magnesium and cobalt transport protein CorA, at 736,908 to 737,870
_RS11315
Group
Condition
RPSI07
_RS11295
RPSI07
_RS11300
RPSI07
_RS11305
RPSI07
_RS11310
RPSI07
_RS11315
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-2.7
-0.2
-0.3
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-2.6
-0.6
+0.0
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
-2.9
-0.3
+0.2
-0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-2.4
-0.8
-0.2
-0.1
+0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.9
-1.0
-0.2
-0.1
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
-1.9
+0.1
+0.0
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-2.3
+0.1
+0.0
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.2
-0.6
-1.3
+0.0
-0.5
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.6
-1.2
+0.1
+0.0
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.4
-1.4
-0.2
+0.1
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.9
-1.0
+0.1
+0.1
-0.2
m63_quarter_strength
M63_quarter_strength
-0.6
-1.3
+0.0
-0.2
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
-1.7
+0.1
-0.1
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
-1.2
-0.0
+0.2
-0.4
m63_quarter_strength
M63_quarter_strength
-0.7
-0.7
+0.1
-0.2
+0.1
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-0.7
-0.6
+0.2
+0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.5
-0.3
-0.7
+0.0
+0.4
m63_quarter_strength
M63_quarter_strength
-0.2
-1.1
+0.3
+0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix
-0.9
-0.1
+0.3
+0.3
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.8
-0.5
-1.0
+0.4
-0.6
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.3
-0.8
-0.1
+0.3
+0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-1.1
-0.2
+0.4
-0.1
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.6
-0.4
+0.4
-0.2
+0.3
cpg no stress control
CPG no stress control
+1.0
-0.4
-0.8
-0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.6
-0.5
+0.6
-0.0
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.8
-0.1
-0.6
-0.2
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.4
+0.2
+0.5
+0.2
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.4
+0.0
+0.8
+0.3
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+2.1
+0.0
-0.6
-0.2
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+3.2
+0.1
+0.5
+0.2
-0.9
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