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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS11055 and RPSI07_RS11060 are separated by 44 nucleotides
RPSI07_RS11060 and RPSI07_RS11065 are separated by 247 nucleotides
RPSI07_RS11065 and RPSI07_RS11070 are separated by 175 nucleotides
RPSI07_RS11070 and RPSI07_RS11075 are separated by 26 nucleotides
RPSI07_RS11055: RPSI07_RS11055 - type II secretion system F family protein, at 681,174 to 682,439
_RS11055
RPSI07_RS11060: RPSI07_RS11060 - type IV-A pilus assembly ATPase PilB, at 682,484 to 684,211
_RS11060
RPSI07_RS11065: RPSI07_RS11065 - HlyC/CorC family transporter, at 684,459 to 685,736
_RS11065
RPSI07_RS11070: RPSI07_RS11070 - tRNA-Pro, at 685,912 to 685,988
_RS11070
RPSI07_RS11075: RPSI07_RS11075 - octaprenyl diphosphate synthase, at 686,015 to 686,983
_RS11075
Group
Condition
RPSI07
_RS11055
RPSI07
_RS11060
RPSI07
_RS11065
RPSI07
_RS11070
RPSI07
_RS11075
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.3
-0.3
+0.2
N.D.
N.D.
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.5
+0.3
-0.0
N.D.
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.4
-0.5
+0.1
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
-0.4
+0.2
N.D.
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.2
-0.4
+0.3
N.D.
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.5
-0.4
+0.5
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
+0.2
+0.3
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.6
+0.2
+0.2
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.7
+0.3
-0.0
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.6
+0.4
+0.1
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.7
+0.3
+0.1
N.D.
N.D.
smsa no antibiotic control
SMSA no antibiotic control
+0.8
+0.3
+0.0
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
+0.6
+0.2
+0.3
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.6
+0.5
+0.0
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.6
+0.7
-0.1
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.5
+0.8
+0.1
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.6
+0.6
+0.2
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.6
+0.8
+0.0
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.7
+0.7
+0.2
N.D.
N.D.
cpg
CPG
+0.8
+0.8
-0.0
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+1.0
+0.7
+0.0
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.5
+0.9
+0.4
N.D.
N.D.
cpg
CPG
+0.8
+0.8
+0.3
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.0
+1.0
+0.1
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.1
+1.1
+0.0
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.8
+1.4
+0.1
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.5
+1.6
+0.2
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.2
+1.7
-0.2
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+1.3
+1.0
+0.5
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.4
+1.8
-0.1
N.D.
N.D.
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