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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS10480 and RPSI07_RS10485 are separated by 336 nucleotides
RPSI07_RS10485 and RPSI07_RS10490 are separated by 418 nucleotides
RPSI07_RS10490 and RPSI07_RS10495 are separated by 19 nucleotides
RPSI07_RS10495 and RPSI07_RS10500 are separated by 12 nucleotides
RPSI07_RS10480: RPSI07_RS10480 - iron ABC transporter substrate-binding protein, at 553,254 to 554,396
_RS10480
RPSI07_RS10485: RPSI07_RS10485 - porin, at 554,733 to 555,860
_RS10485
RPSI07_RS10490: RPSI07_RS10490 - PDZ domain-containing protein, at 556,279 to 557,493
_RS10490
RPSI07_RS10495: RPSI07_RS10495 - Nif3-like dinuclear metal center hexameric protein, at 557,513 to 558,259
_RS10495
RPSI07_RS10500: RPSI07_RS10500 - large conductance mechanosensitive channel protein MscL, at 558,272 to 558,697
_RS10500
Group
Condition
RPSI07
_RS10480
RPSI07
_RS10485
RPSI07
_RS10490
RPSI07
_RS10495
RPSI07
_RS10500
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.5
N.D.
-0.6
-0.1
-1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.2
N.D.
-1.0
-0.2
-0.2
m63_quarter_strength
M63_quarter_strength
+0.1
N.D.
-0.5
-0.1
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
N.D.
+0.6
-0.2
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.3
N.D.
+0.5
+0.0
-1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.2
N.D.
+0.1
+0.2
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.3
N.D.
+0.5
+0.1
-1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.2
N.D.
+0.7
-0.0
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.3
N.D.
+0.7
-0.0
-0.9
cpg no stress control
CPG no stress control
-0.4
N.D.
+0.9
+0.1
-1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.1
N.D.
-0.9
-0.6
+1.2
stress
SMSA with Ralstonia_antibiotic_mix
-0.2
N.D.
+0.9
+0.0
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.1
N.D.
+1.1
+0.2
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.1
N.D.
+1.4
+0.0
-1.3
smsa no antibiotic control
SMSA no antibiotic control
-0.1
N.D.
+1.2
+0.0
-1.1
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
+0.0
N.D.
+0.4
-0.8
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.1
N.D.
+1.1
+0.2
-1.1
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
+0.0
N.D.
+0.7
+0.7
-0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.0
N.D.
-0.8
-0.1
+1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
N.D.
-0.4
-0.2
+1.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.5
N.D.
+0.9
+0.5
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.3
N.D.
-0.1
-0.4
+1.4
stress
SMSA with Ralstonia_antibiotic_mix
+0.3
N.D.
-0.5
-0.1
+1.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.0
N.D.
-0.4
+0.3
+1.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.2
N.D.
-0.4
+0.2
+1.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.1
N.D.
+0.2
-0.1
+1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.2
N.D.
+0.2
+0.0
+1.5
smsa no antibiotic control
SMSA no antibiotic control
+0.0
N.D.
-0.1
+0.1
+1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
N.D.
+0.0
+0.2
+1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
N.D.
+0.2
+0.2
+1.5
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