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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS10220 and RPSI07_RS10225 are separated by 102 nucleotides
RPSI07_RS10225 and RPSI07_RS10230 are separated by 24 nucleotides
RPSI07_RS10230 and RPSI07_RS10235 are separated by 8 nucleotides
RPSI07_RS10235 and RPSI07_RS10240 are separated by 96 nucleotides
RPSI07_RS10220: RPSI07_RS10220 - c-type cytochrome biogenesis protein CcsB, at 501,446 to 502,633
_RS10220
RPSI07_RS10225: RPSI07_RS10225 - hypothetical protein, at 502,736 to 503,167
_RS10225
RPSI07_RS10230: RPSI07_RS10230 - RNA polymerase sigma factor, at 503,192 to 503,725
_RS10230
RPSI07_RS10235: RPSI07_RS10235 - membrane protein, at 503,734 to 504,594
_RS10235
RPSI07_RS10240: RPSI07_RS10240 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 504,691 to 505,686
_RS10240
Group
Condition
RPSI07
_RS10220
RPSI07
_RS10225
RPSI07
_RS10230
RPSI07
_RS10235
RPSI07
_RS10240
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-1.8
+0.6
N.D.
-2.7
+0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
-0.7
-0.3
N.D.
-2.2
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-1.1
+0.5
N.D.
-1.3
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.9
-0.3
N.D.
-0.6
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.6
N.D.
-1.3
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.8
+0.5
N.D.
-1.5
+0.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.5
+0.2
N.D.
-1.2
-0.0
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.3
+0.6
N.D.
-1.5
-0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.4
+0.4
N.D.
-1.3
+0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
+0.3
N.D.
-1.2
-0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.3
+0.4
N.D.
-1.2
-0.0
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.5
+0.3
N.D.
-0.8
-0.2
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.7
+0.2
N.D.
-0.8
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.6
+0.2
N.D.
-0.7
+0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.5
+0.5
N.D.
-0.9
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.6
-0.7
N.D.
+0.5
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-1.0
+0.6
N.D.
-0.3
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-1.2
+0.3
N.D.
+0.2
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-1.4
+0.5
N.D.
+0.3
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.4
+0.4
N.D.
-0.8
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.8
-0.1
N.D.
+0.8
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.9
+0.2
N.D.
+0.9
-0.1
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.9
-0.1
N.D.
+1.4
+0.1
m63_quarter_strength
M63_quarter_strength
+0.6
-0.5
N.D.
+1.0
-0.1
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.6
+0.7
N.D.
+1.5
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+1.3
-0.2
N.D.
+0.1
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.6
+0.7
N.D.
+0.7
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+1.5
+0.7
N.D.
+0.5
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+1.9
+0.2
N.D.
+0.6
+0.0
m63_quarter_strength
M63_quarter_strength
+1.1
+2.3
N.D.
+0.7
+0.4
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