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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS09880 and RPSI07_RS09885 are separated by 68 nucleotides
RPSI07_RS09885 and RPSI07_RS09890 are separated by 140 nucleotides
RPSI07_RS09890 and RPSI07_RS09895 are separated by 119 nucleotides
RPSI07_RS09895 and RPSI07_RS09900 are separated by 490 nucleotides
RPSI07_RS09880: RPSI07_RS09880 - ABC transporter ATP-binding protein, at 435,377 to 436,498
_RS09880
RPSI07_RS09885: RPSI07_RS09885 - glycerol-3-phosphate dehydrogenase, at 436,567 to 438,144
_RS09885
RPSI07_RS09890: RPSI07_RS09890 - DeoR/GlpR transcriptional regulator, at 438,285 to 439,049
_RS09890
RPSI07_RS09895: RPSI07_RS09895 - CHAD domain-containing protein, at 439,169 to 440,026
_RS09895
RPSI07_RS09900: RPSI07_RS09900 - 16S ribosomal RNA, at 440,517 to 442,063
_RS09900
Group
Condition
RPSI07
_RS09880
RPSI07
_RS09885
RPSI07
_RS09890
RPSI07
_RS09895
RPSI07
_RS09900
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.2
-0.9
+0.1
-3.0
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.1
-0.5
+0.5
-3.3
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.1
-1.3
-0.2
-0.7
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
-0.5
-0.1
-1.6
N.D.
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
-0.5
-0.2
-1.4
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.0
-0.6
+0.5
-2.1
N.D.
smsa no antibiotic control
SMSA no antibiotic control
-0.2
-1.3
-0.0
-0.5
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.3
-1.2
-0.1
-0.3
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.1
-1.1
-0.3
-0.5
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.3
-1.2
-0.0
-0.3
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
-1.2
-0.1
-0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
-0.2
-1.1
+0.0
-0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.2
-1.4
+0.0
-0.1
N.D.
smsa no antibiotic control
SMSA no antibiotic control
-0.1
-1.3
+0.1
-0.2
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.2
-1.4
+0.0
+0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.1
-1.4
+0.1
-0.1
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.3
-0.9
-0.3
-0.5
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.1
-1.5
+0.1
+0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
-1.4
+0.1
+0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.2
-1.3
+0.3
+0.4
N.D.
smsa no antibiotic control
SMSA no antibiotic control
+0.0
-1.4
+0.1
+0.6
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.2
-1.5
+0.3
+0.6
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.0
-0.5
+0.7
-0.9
N.D.
stress
SMSA with Ralstonia_antibiotic_mix
-0.1
-1.4
+0.3
+0.5
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.0
-1.5
+0.4
+0.5
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.2
-1.5
+0.2
+0.5
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.0
-1.2
+0.4
+0.4
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.0
-0.9
+0.3
+0.6
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.3
+1.1
+0.4
-0.2
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.3
+0.8
+0.7
+0.5
N.D.
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