Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS08525 and RPSI07_RS08530 are separated by 167 nucleotidesRPSI07_RS08530 and RPSI07_RS08535 are separated by 582 nucleotidesRPSI07_RS08535 and RPSI07_RS08540 are separated by 161 nucleotidesRPSI07_RS08540 and RPSI07_RS08545 are separated by 129 nucleotides RPSI07_RS08525: RPSI07_RS08525 - cupin domain-containing protein, at 144,412 to 144,894 _RS08525 RPSI07_RS08530: RPSI07_RS08530 - uroporphyrinogen decarboxylase, at 145,062 to 146,156 _RS08530 RPSI07_RS08535: RPSI07_RS08535 - primosomal protein N', at 146,739 to 149,045 _RS08535 RPSI07_RS08540: RPSI07_RS08540 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 149,207 to 153,190 _RS08540 RPSI07_RS08545: RPSI07_RS08545 - branched-chain amino acid ABC transporter substrate-binding protein, at 153,320 to 154,453 _RS08545
Group Condition RPSI07_RS08525 RPSI07_RS08530 RPSI07_RS08535 RPSI07_RS08540 RPSI07_RS08545
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 N.D. N.D. -0.5 -0.4
cpg CPG -0.3 N.D. N.D. -0.3 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 N.D. N.D. -0.5 -0.4
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.8 N.D. N.D. +0.0 +0.0
stress SMSA with Ralstonia_antibiotic_mix -0.4 N.D. N.D. -0.4 +0.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.8 N.D. N.D. -0.3 +0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.6 N.D. N.D. -0.1 +0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -0.5 N.D. N.D. -0.2 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.2 N.D. N.D. -0.3 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.5 N.D. N.D. -0.2 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.3 N.D. N.D. -0.3 +0.3
smsa no antibiotic control SMSA no antibiotic control -0.4 N.D. N.D. -0.1 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.4 N.D. N.D. -0.4 -0.1
stress SMSA with Ralstonia_antibiotic_mix +0.4 N.D. N.D. -0.3 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 N.D. N.D. -0.4 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.1 N.D. N.D. -0.3 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.4 N.D. N.D. -0.2 +0.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.7 N.D. N.D. -0.3 +0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.7 N.D. N.D. -0.4 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.3 N.D. N.D. +0.1 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.5 N.D. N.D. +0.2 +0.8
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.6 N.D. N.D. -0.1 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.9 N.D. N.D. -0.1 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.6 N.D. N.D. -0.1 +0.3
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.8 N.D. N.D. -0.1 +0.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.2 N.D. N.D. -0.4 -0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.1 N.D. N.D. +0.2 +0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.9 N.D. N.D. -0.1 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +1.2 N.D. N.D. -0.1 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +1.1 N.D. N.D. -0.2 +0.6
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RPSI07_RS08525
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