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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS08245 and RPSI07_RS08250 are separated by 149 nucleotides
RPSI07_RS08250 and RPSI07_RS08255 are separated by 637 nucleotides
RPSI07_RS08255 and RPSI07_RS08260 are separated by 14 nucleotides
RPSI07_RS08260 and RPSI07_RS08265 are separated by 23 nucleotides
RPSI07_RS08245: RPSI07_RS08245 - DUF2272 domain-containing protein, at 91,598 to 92,551
_RS08245
RPSI07_RS08250: RPSI07_RS08250 - HU family DNA-binding protein, at 92,701 to 92,979
_RS08250
RPSI07_RS08255: RPSI07_RS08255 - SET domain-containing protein-lysine N-methyltransferase, at 93,617 to 94,153
_RS08255
RPSI07_RS08260: RPSI07_RS08260 - sensor histidine kinase, at 94,168 to 95,850
_RS08260
RPSI07_RS08265: RPSI07_RS08265 - DNA-binding response regulator, at 95,874 to 96,584
_RS08265
Group
Condition
RPSI07
_RS08245
RPSI07
_RS08250
RPSI07
_RS08255
RPSI07
_RS08260
RPSI07
_RS08265
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.3
-1.2
-0.8
-0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.3
-1.4
-0.6
+0.0
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.8
-3.0
+0.6
+0.0
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.3
-1.6
+0.0
-0.1
-0.2
cpg
CPG
-0.1
-1.9
-0.2
+0.1
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.3
-1.1
-0.6
+0.2
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.3
-1.0
-0.2
-0.2
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.5
-0.7
-0.1
-0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.5
-1.0
-0.1
+0.0
-0.1
cpg no stress control
CPG no stress control
-0.3
-1.2
+0.1
-0.0
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.4
-1.0
-0.2
+0.1
+0.0
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-1.3
+0.5
+0.7
-0.2
-0.1
m63_quarter_strength
M63_quarter_strength
+0.2
-0.2
+0.5
-0.0
-0.9
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+1.0
-1.4
+0.5
+0.4
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.5
-0.6
+0.4
-0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.2
+0.7
+0.3
-0.3
-0.3
stress
SMSA with Ralstonia_antibiotic_mix
+0.1
+0.5
+0.6
-0.2
-0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
-0.7
+0.7
-0.1
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
-0.3
+0.9
-0.2
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.1
+0.4
+0.8
-0.2
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.1
+0.8
+0.3
-0.0
-0.5
smsa no antibiotic control
SMSA no antibiotic control
+0.0
+0.6
+0.8
-0.1
-0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
-0.8
+0.6
+0.3
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.2
+0.7
+0.7
-0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.1
+0.7
+0.9
-0.2
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.2
+0.4
+1.0
-0.0
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
+1.2
+0.6
-0.1
-0.4
m63_quarter_strength
M63_quarter_strength
+0.1
+1.3
+0.2
-0.1
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.4
+1.0
+0.5
+0.1
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
+0.1
+1.1
+0.3
+0.5
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