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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS08045 and RPSI07_RS08050 are separated by 34 nucleotides
RPSI07_RS08050 and RPSI07_RS08055 overlap by 25 nucleotides
RPSI07_RS08055 and RPSI07_RS08060 are separated by 98 nucleotides
RPSI07_RS08060 and RPSI07_RS08065 are separated by 221 nucleotides
RPSI07_RS08045: RPSI07_RS08045 - membrane protein, at 43,278 to 44,063
_RS08045
RPSI07_RS08050: RPSI07_RS08050 - DNA-binding response regulator, at 44,098 to 44,763
_RS08050
RPSI07_RS08055: RPSI07_RS08055 - two-component sensor histidine kinase, at 44,739 to 46,079
_RS08055
RPSI07_RS08060: RPSI07_RS08060 - CPBP family intramembrane metalloprotease, at 46,178 to 47,002
_RS08060
RPSI07_RS08065: RPSI07_RS08065 - MFS transporter, at 47,224 to 48,495
_RS08065
Group
Condition
RPSI07
_RS08045
RPSI07
_RS08050
RPSI07
_RS08055
RPSI07
_RS08060
RPSI07
_RS08065
stress
SMSA with Ralstonia_antibiotic_mix
-0.2
-0.2
-0.4
-0.1
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.1
-0.3
-0.3
+0.2
-0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.2
-0.5
-0.0
-0.2
+0.0
stress
SMSA with Ralstonia_antibiotic_mix
-0.3
-0.1
-0.2
-0.0
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.1
-0.4
-0.2
+0.1
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.3
-0.2
+0.2
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.0
-0.0
+0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.1
-0.2
-0.2
+0.1
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.2
-0.2
+0.2
+0.1
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.2
-0.1
-0.1
-0.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.3
-0.2
-0.1
+0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.1
-0.1
-0.3
+0.4
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.3
-0.0
-0.3
+0.1
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
-0.7
-0.1
+0.3
+0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
+0.1
-0.3
+0.1
+0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.3
-0.3
-0.1
+0.2
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.4
+0.2
+0.2
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.3
+0.1
-0.2
-0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.2
-0.2
-0.3
+0.3
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.0
-0.4
+0.1
+0.4
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.2
+0.1
+0.4
+0.0
m63_quarter_strength
M63_quarter_strength
-0.0
-0.2
+0.2
+0.2
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.1
-0.1
+0.2
+0.3
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.4
+0.1
+0.1
-0.1
+0.2
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.3
+0.2
+0.2
-0.0
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
+0.0
+0.3
+0.4
-0.0
m63_quarter_strength
M63_quarter_strength
+0.0
+0.4
+0.3
-0.0
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
+0.2
+0.1
+0.1
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
+0.2
+0.1
+0.1
+0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+1.0
+0.6
+0.0
+0.6
+0.1
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