Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS05885 and RPSI07_RS05890 overlap by 85 nucleotidesRPSI07_RS05890 and RPSI07_RS05895 are separated by 371 nucleotidesRPSI07_RS05895 and RPSI07_RS05900 are separated by 126 nucleotidesRPSI07_RS05900 and RPSI07_RS05905 are separated by 180 nucleotides RPSI07_RS05885: RPSI07_RS05885 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,601,671 to 1,603,467 _RS05885 RPSI07_RS05890: RPSI07_RS05890 - filamentous hemagglutinin N-terminal domain-containing protein, at 1,603,383 to 1,607,447 _RS05890 RPSI07_RS05895: RPSI07_RS05895 - MFS transporter, at 1,607,819 to 1,609,324 _RS05895 RPSI07_RS05900: RPSI07_RS05900 - class II fumarate hydratase, at 1,609,451 to 1,610,836 _RS05900 RPSI07_RS05905: RPSI07_RS05905 - type IV pilin protein, at 1,611,017 to 1,611,484 _RS05905
Group Condition RPSI07_RS05885 RPSI07_RS05890 RPSI07_RS05895 RPSI07_RS05900 RPSI07_RS05905
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.2 +0.0 -0.5 -4.7 -0.0
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 +0.1 -0.2 -4.8 +0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 +0.1 +0.4 -4.1 -0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 -0.1 +0.3 -3.2 -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 -0.0 -0.2 -2.8 +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 +0.0 -0.3 -2.4 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 -0.0 -0.3 -0.5 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 -0.1 -0.1 -0.4 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.2 -0.2 -0.4 -0.2 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 -0.2 -0.0 -0.5 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.2 -0.1 -0.4 -0.2 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 +0.1 -0.0 -0.7 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.1 -0.1 -0.1 -0.6 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.0 -0.1 -0.0 -0.6 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.0 +0.1 -0.0 -0.7 +0.0
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 +0.1 +0.2 -1.1 +0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.1 -0.1 -0.3 -0.3 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol +0.1 +0.1 +0.1 -0.7 -0.0
m63_quarter_strength M63_quarter_strength -0.1 +0.0 -0.3 -0.3 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 +0.1 +0.4 -0.8 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.1 +0.0 +0.2 -0.4 -0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.0 -0.1 +0.2 +0.4 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.0 -0.1 -0.2 +0.5 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol +0.0 -0.0 +0.3 +0.4 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.0 +0.2 +0.6 -0.1 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.1 +0.0 -0.1 +1.0 +0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.1 +0.0 +0.4 +0.8 -0.1
m63_quarter_strength M63_quarter_strength +0.3 -0.2 +0.3 +0.8 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.0 +0.1 +0.1 +1.4 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.0 +0.1 +0.3 +1.4 -0.2
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RPSI07_RS05885
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RPSI07_RS05890
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RPSI07_RS05900
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RPSI07_RS05905
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