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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS05350 and RPSI07_RS05355 are separated by 71 nucleotides
RPSI07_RS05355 and RPSI07_RS05360 are separated by 137 nucleotides
RPSI07_RS05360 and RPSI07_RS05365 are separated by 229 nucleotides
RPSI07_RS05365 and RPSI07_RS05370 overlap by 4 nucleotides
RPSI07_RS05350: RPSI07_RS05350 - two-component sensor histidine kinase, at 1,456,989 to 1,458,551
_RS05350
RPSI07_RS05355: RPSI07_RS05355 - hypothetical protein, at 1,458,623 to 1,458,811
_RS05355
RPSI07_RS05360: RPSI07_RS05360 - TetR/AcrR family transcriptional regulator, at 1,458,949 to 1,459,650
_RS05360
RPSI07_RS05365: RPSI07_RS05365 - hypothetical protein, at 1,459,880 to 1,460,338
_RS05365
RPSI07_RS05370: RPSI07_RS05370 - DUF2145 domain-containing protein, at 1,460,335 to 1,461,288
_RS05370
Group
Condition
RPSI07
_RS05350
RPSI07
_RS05355
RPSI07
_RS05360
RPSI07
_RS05365
RPSI07
_RS05370
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.2
-1.9
-0.2
-0.5
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.2
-1.1
-0.9
+0.1
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.3
-1.0
+0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix
+0.3
-1.2
-0.2
+0.1
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.0
-1.3
+0.1
-0.2
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.3
-1.0
-0.3
+0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.4
-0.4
-0.4
-0.2
-0.2
smsa no antibiotic control
SMSA no antibiotic control
+0.3
-0.5
-0.4
-0.1
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.2
+0.3
-0.5
-0.6
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.2
-0.4
-0.5
+0.1
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.8
-1.0
-0.2
-0.2
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.1
-1.0
+0.5
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
-0.5
-0.4
+0.5
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.1
+0.3
+0.0
-0.7
+0.2
m63_quarter_strength
M63_quarter_strength
-0.5
-0.2
-0.1
+0.7
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
-0.9
-0.2
+0.6
+0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.2
+0.9
-0.8
-0.3
-0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.3
+0.5
-0.6
-0.3
+0.2
m63_quarter_strength
M63_quarter_strength
+0.2
-0.7
+0.5
+0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.5
+0.5
-0.5
+0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.0
+0.7
+0.1
-0.6
+0.4
cpg no stress control
CPG no stress control
-0.1
+0.4
+0.0
-0.4
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.3
+0.5
-0.2
-0.5
+0.6
smsa no antibiotic control
SMSA no antibiotic control
+0.1
+0.7
-0.0
-0.4
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.1
+1.0
-0.0
-0.5
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.1
+0.5
+0.5
-0.5
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
+1.0
+0.0
-0.5
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
+0.7
+0.0
-0.3
+0.5
stress
SMSA with Ralstonia_antibiotic_mix
-0.1
+0.9
+0.2
+0.0
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.1
+1.5
+0.2
-0.3
+0.3
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