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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS04460 and RPSI07_RS04465 are separated by 3 nucleotides
RPSI07_RS04465 and RPSI07_RS04470 are separated by 33 nucleotides
RPSI07_RS04470 and RPSI07_RS04475 overlap by 4 nucleotides
RPSI07_RS04475 and RPSI07_RS04480 overlap by 4 nucleotides
RPSI07_RS04460: RPSI07_RS04460 - acetyltransferase, at 1,205,375 to 1,206,022
_RS04460
RPSI07_RS04465: RPSI07_RS04465 - sugar transferase, at 1,206,026 to 1,206,637
_RS04465
RPSI07_RS04470: RPSI07_RS04470 - glycosyltransferase WbuB, at 1,206,671 to 1,207,924
_RS04470
RPSI07_RS04475: RPSI07_RS04475 - heparinase ii/iii-like domain, at 1,207,921 to 1,209,756
_RS04475
RPSI07_RS04480: RPSI07_RS04480 - dehydrogenase, at 1,209,753 to 1,211,894
_RS04480
Group
Condition
RPSI07
_RS04460
RPSI07
_RS04465
RPSI07
_RS04470
RPSI07
_RS04475
RPSI07
_RS04480
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-3.8
-0.7
-0.0
-1.0
-1.1
smsa no antibiotic control
SMSA no antibiotic control
-2.4
-0.9
-0.8
-0.6
-1.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-2.7
-1.0
-0.4
-0.5
-1.4
stress
SMSA with Ralstonia_antibiotic_mix
-2.7
-0.8
-0.7
-0.4
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-2.9
-0.6
-0.3
-0.6
-1.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-3.1
-0.5
-0.0
-0.8
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-2.4
-0.8
-0.4
-0.6
-1.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-2.7
-0.8
-0.2
-0.4
-1.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-2.1
-0.6
-0.4
-1.2
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-2.4
-0.9
-0.1
-1.0
-1.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-2.5
-0.4
-0.4
-0.6
-1.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-2.7
-0.3
+0.2
-1.1
-1.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-2.4
-0.3
-0.4
-1.1
-0.8
cpg no stress control
CPG no stress control
-2.2
-0.3
-0.5
-0.7
-1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-2.2
-0.3
-0.4
-0.5
-1.2
cpg
CPG
-1.4
-0.9
-0.3
-0.8
-1.1
cpg
CPG
-1.3
-1.0
-0.5
-0.7
-1.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-2.6
-0.3
-0.3
-0.1
-1.0
m63_quarter_strength
M63_quarter_strength
-1.0
-0.8
-1.2
-0.5
-0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-2.5
+0.5
-0.4
-0.7
-1.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-1.9
-0.2
-0.2
-0.6
-1.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-2.5
-0.9
-0.1
-0.2
-0.6
m63_quarter_strength
M63_quarter_strength
-1.3
-0.5
-0.6
-0.7
-1.0
cpg no stress control
CPG no stress control
-1.7
-0.5
-0.5
-0.5
-0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-2.1
-0.7
+0.2
-0.5
-0.6
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-1.5
+1.3
+1.0
+0.7
+0.5
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-1.3
+1.2
+1.0
+0.7
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+1.8
+1.5
+1.0
+0.6
+1.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+2.1
+2.2
+1.1
+0.7
+0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+3.3
+1.7
+0.7
+1.3
+2.3
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