Fitness for 5 genes in Ralstonia solanacearum PSI07

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 81 experiments or choose conditions or try the comparative fitness browser

500 ntRPSI07_RS04340 and RPSI07_RS04345 are separated by 452 nucleotidesRPSI07_RS04345 and RPSI07_RS04350 are separated by 51 nucleotidesRPSI07_RS04350 and RPSI07_RS04355 are separated by 120 nucleotidesRPSI07_RS04355 and RPSI07_RS04360 are separated by 77 nucleotides RPSI07_RS04340: RPSI07_RS04340 - hypothetical protein, at 1,170,338 to 1,170,622 _RS04340 RPSI07_RS04345: RPSI07_RS04345 - LuxR family transcriptional regulator, at 1,171,075 to 1,171,848 _RS04345 RPSI07_RS04350: RPSI07_RS04350 - thiamine phosphate synthase, at 1,171,900 to 1,172,496 _RS04350 RPSI07_RS04355: RPSI07_RS04355 - MFS transporter, at 1,172,617 to 1,174,023 _RS04355 RPSI07_RS04360: RPSI07_RS04360 - 4-hydroxybutyrate dehydrogenase, at 1,174,101 to 1,175,249 _RS04360
Group Condition RPSI07_RS04340 RPSI07_RS04345 RPSI07_RS04350 RPSI07_RS04355 RPSI07_RS04360
cpg CPG -0.3 -0.3 -1.0 -0.3 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.0 +0.1 -0.9 -0.0 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.1 +0.2 -0.5 -0.2 +0.2
stress SMSA with Ralstonia_antibiotic_mix +0.2 +0.4 -0.5 -0.2 +0.1
cpg no stress control CPG no stress control -0.3 -0.4 +0.5 +0.2 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -0.1 -0.4 +0.5 +0.2 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 -0.3 +0.7 +0.0 -0.0
smsa no antibiotic control SMSA no antibiotic control -0.2 -0.4 +0.9 +0.2 +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.1 -0.5 +0.6 +0.3 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 -0.2 +0.2 +0.2 +0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 -0.2 +0.6 +0.1 +0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 -0.2 +0.8 -0.1 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.2 +0.3 +0.7 +0.2 -0.0
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.0 +0.5 +0.4 +0.2 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.1 +0.1 +0.8 +0.2 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.0 +0.7 +0.2 +0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.1 +0.4 +0.4 +0.2 +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 +0.4 +0.4 +0.1 +0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.3 +0.6 +0.5 +0.1 +0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 +0.0 +0.9 -0.1 +0.6
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.3 +0.1 +1.2 +0.2 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.1 +0.7 +0.1 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.2 +0.1 +1.1 +0.3 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 +0.0 +0.9 +0.4 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 +0.0 +1.0 +0.3 +0.6
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.0 +0.1 +1.0 +0.4 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.1 +0.2 +0.9 +0.4 +0.5
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.3 +0.3 +1.2 +0.3 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.1 -0.2 +1.8 +0.4 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.2 -0.1 +1.9 +0.6 +0.5
remove
RPSI07_RS04340
plot		 remove
RPSI07_RS04345
plot		 remove
RPSI07_RS04350		 remove
RPSI07_RS04355
plot		 remove
RPSI07_RS04360
plot