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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS03420 and RPSI07_RS03425 overlap by 4 nucleotides
RPSI07_RS03425 and RPSI07_RS03430 are separated by 206 nucleotides
RPSI07_RS03430 and RPSI07_RS03435 are separated by 41 nucleotides
RPSI07_RS03435 and RPSI07_RS03440 are separated by 18 nucleotides
RPSI07_RS03420: RPSI07_RS03420 - MFS transporter, at 932,647 to 934,257
_RS03420
RPSI07_RS03425: RPSI07_RS03425 - multidrug transporter, at 934,254 to 935,741
_RS03425
RPSI07_RS03430: RPSI07_RS03430 - TetR family transcriptional regulator, at 935,948 to 936,598
_RS03430
RPSI07_RS03435: RPSI07_RS03435 - isochorismatase hydrolase, at 936,640 to 937,224
_RS03435
RPSI07_RS03440: RPSI07_RS03440 - pirin family protein, at 937,243 to 937,980
_RS03440
Group
Condition
RPSI07
_RS03420
RPSI07
_RS03425
RPSI07
_RS03430
RPSI07
_RS03435
RPSI07
_RS03440
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.0
-2.4
N.D.
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.3
-1.2
N.D.
-0.6
m63_quarter_strength
M63_quarter_strength
-0.3
+0.1
-0.7
N.D.
-0.8
cpg
CPG
-0.1
+0.2
-1.3
N.D.
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
+0.2
-2.0
N.D.
+0.5
cpg no stress control
CPG no stress control
-0.1
-0.0
-2.1
N.D.
+0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.5
-0.0
-1.7
N.D.
+0.7
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.1
-1.4
N.D.
+0.0
smsa no antibiotic control
SMSA no antibiotic control
-0.3
+0.0
-1.8
N.D.
+0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.3
+0.0
-1.2
N.D.
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.2
+0.1
-1.9
N.D.
+0.8
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.3
+0.0
+0.1
N.D.
-1.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.1
+0.1
-1.7
N.D.
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.3
+0.1
-1.5
N.D.
+0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.3
+0.1
-1.2
N.D.
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.2
-0.0
-1.2
N.D.
+0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.1
+0.1
-1.2
N.D.
+0.7
stress
SMSA with Ralstonia_antibiotic_mix
-0.2
+0.1
-1.3
N.D.
+1.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.5
-0.0
-1.5
N.D.
+2.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.3
-0.2
+1.0
N.D.
-0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
-0.4
-1.2
N.D.
+2.1
smsa no antibiotic control
SMSA no antibiotic control
+0.1
-0.2
+1.1
N.D.
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.2
+0.1
+1.0
N.D.
-0.8
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.2
+0.0
+1.3
N.D.
-1.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.6
-0.1
+1.0
N.D.
-0.6
stress
SMSA with Ralstonia_antibiotic_mix
+0.0
-0.1
+1.7
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.2
+0.1
+1.5
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.3
-0.2
+1.4
N.D.
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.0
+0.2
+1.7
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.3
-0.1
+2.0
N.D.
+0.0
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