Fitness for 5 genes in Ralstonia solanacearum PSI07

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 81 experiments or choose conditions or try the comparative fitness browser

500 ntRPSI07_RS03355 and RPSI07_RS03360 overlap by 4 nucleotidesRPSI07_RS03360 and RPSI07_RS03365 overlap by 4 nucleotidesRPSI07_RS03365 and RPSI07_RS03370 are separated by 506 nucleotidesRPSI07_RS03370 and RPSI07_RS03375 are separated by 236 nucleotides RPSI07_RS03355: RPSI07_RS03355 - TonB-dependent receptor, at 913,446 to 915,404 _RS03355 RPSI07_RS03360: RPSI07_RS03360 - DUF4154 domain-containing protein, at 915,401 to 915,961 _RS03360 RPSI07_RS03365: RPSI07_RS03365 - GGDEF-domain containing protein, at 915,958 to 917,949 _RS03365 RPSI07_RS03370: RPSI07_RS03370 - malate dehydrogenase (quinone), at 918,456 to 920,111 _RS03370 RPSI07_RS03375: RPSI07_RS03375 - TetR/AcrR family transcriptional regulator, at 920,348 to 920,971 _RS03375
Group Condition RPSI07_RS03355 RPSI07_RS03360 RPSI07_RS03365 RPSI07_RS03370 RPSI07_RS03375
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.6 -1.1 -0.7 -0.4 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 -0.3 -0.4 -0.2 -1.0
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.0 -0.7 -0.1 -0.3 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.0 -0.6 +0.2 -0.2 -0.7
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 -0.6 +0.1 +0.1 -1.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.1 -0.3 -0.0 -0.0 -1.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -0.0 -0.7 -0.2 -0.2 -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.1 -0.3 -0.0 -0.1 -0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.1 -0.2 -0.2 +0.0 -0.9
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 +0.0 +0.1 -0.2 -1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.1 -0.3 +0.1 -1.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 -0.2 -0.2 +0.0 -0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 -0.1 +0.1 -0.2 -1.0
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 +0.0 +0.0 +0.2 -0.9
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.0 +0.4 -0.2 -0.1 -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.6 +0.1 -0.7 -0.1 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 -0.1 +0.2 +0.1 -0.7
cpg CPG +0.5 -0.5 +0.0 -0.1 +0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.7 -0.2 +0.2 -1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin +0.1 +0.8 +0.1 -0.2 -0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.2 -0.1 +0.0 +0.5 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.3 -0.2 +0.0 +0.7 -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin +0.3 +0.5 -0.1 +0.1 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.2 +0.5 -0.2 +0.3 -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.9 -0.0 +0.2 -0.6
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.2 +0.9 -0.0 -0.2 -0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.2 +0.0 +0.1 +0.3 +1.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.0 -0.1 -0.1 +0.1 +2.8
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.1 -0.2 +0.3 -0.1 +3.0
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.2 +0.4 +0.0 +0.5 +3.9
remove
RPSI07_RS03355
plot		 remove
RPSI07_RS03360
plot		 remove
RPSI07_RS03365		 remove
RPSI07_RS03370
plot		 remove
RPSI07_RS03375
plot