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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS44640 and QEN71_RS44645 are separated by 722 nucleotides
QEN71_RS44645 and QEN71_RS44650 are separated by 78 nucleotides
QEN71_RS44650 and QEN71_RS44655 are separated by 134 nucleotides
QEN71_RS44655 and QEN71_RS44660 are separated by 307 nucleotides
QEN71_RS44640: QEN71_RS44640 - transposase, at 394,033 to 394,503
_RS44640
QEN71_RS44645: QEN71_RS44645 - IS5/IS1182 family transposase, at 395,226 to 395,362
_RS44645
QEN71_RS44650: QEN71_RS44650 - IS5 family transposase, at 395,441 to 396,247
_RS44650
QEN71_RS44655: QEN71_RS44655 - transposase, at 396,382 to 397,014
_RS44655
QEN71_RS44660: QEN71_RS44660 - IS110 family transposase, at 397,322 to 398,383
_RS44660
Group
Condition
QEN71
_RS44640
QEN71
_RS44645
QEN71
_RS44650
QEN71
_RS44655
QEN71
_RS44660
carbon source
2-Deoxy-D-Ribose (C)
-0.5
-2.0
N.D.
N.D.
N.D.
motility
Motility_inner_sample
-0.1
-1.0
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.1
-1.0
N.D.
N.D.
N.D.
stress
LB_noSalt with Chloride 200 mM
-0.1
-0.5
N.D.
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
-0.4
N.D.
N.D.
N.D.
motility
Motility_outer_sample_with_outgrowth
-0.3
-0.3
N.D.
N.D.
N.D.
stress
LB_noSalt with Chloride 200 mM
+0.1
-0.7
N.D.
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-0.5
N.D.
N.D.
N.D.
motility
Motility_inner_sample
-0.9
+0.5
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+0.2
-0.6
N.D.
N.D.
N.D.
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.5
+0.4
N.D.
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
-0.5
+0.4
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.6
+0.5
N.D.
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
+0.5
N.D.
N.D.
N.D.
carbon source
Fumaric (C)
-0.0
+0.6
N.D.
N.D.
N.D.
coculture
Psabiae_ML3b with MT80
-0.0
+0.6
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
+0.3
+0.3
N.D.
N.D.
N.D.
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
+0.8
N.D.
N.D.
N.D.
carbon source
L-Rhamnose (C)
-0.3
+1.0
N.D.
N.D.
N.D.
stress
LB_noSalt with Chloride 200 mM
+0.2
+0.5
N.D.
N.D.
N.D.
carbon source
succinate (C)
+0.4
+0.3
N.D.
N.D.
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.4
+1.1
N.D.
N.D.
N.D.
carbon source
D-Glucose (C)
+0.2
+0.6
N.D.
N.D.
N.D.
carbon source
Fumaric (C)
+0.3
+0.5
N.D.
N.D.
N.D.
motility
Motility_inner_sample
+0.4
+0.5
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.1
+1.2
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
+0.6
+0.7
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+0.5
+0.8
N.D.
N.D.
N.D.
stress
LB_noSalt with Zinc 0.5 mM
+0.3
+1.2
N.D.
N.D.
N.D.
supernatant
Filtered_supernatant_MT183_in_LB
+0.6
+1.3
N.D.
N.D.
N.D.
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