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Cofit
Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS40875 and QEN71_RS40880 overlap by 1 nucleotides
QEN71_RS40880 and QEN71_RS40885 are separated by 68 nucleotides
QEN71_RS40885 and QEN71_RS40890 overlap by 4 nucleotides
QEN71_RS40890 and QEN71_RS40895 are separated by 52 nucleotides
QEN71_RS40875: QEN71_RS40875 - hypothetical protein, at 239,176 to 239,625
_RS40875
QEN71_RS40880: QEN71_RS40880 - StbB family protein, at 239,625 to 240,335
_RS40880
QEN71_RS40885: QEN71_RS40885 - hypothetical protein, at 240,404 to 242,194
_RS40885
QEN71_RS40890: QEN71_RS40890 - type IV secretory system conjugative DNA transfer family protein, at 242,191 to 243,936
_RS40890
QEN71_RS40895: QEN71_RS40895 - hypothetical protein, at 243,989 to 244,342
_RS40895
Group
Condition
QEN71
_RS40875
QEN71
_RS40880
QEN71
_RS40885
QEN71
_RS40890
QEN71
_RS40895
motility
Motility_inner_sample
-1.4
+0.3
+0.1
-0.2
-0.4
motility
Motility_inner_sample
-2.0
+0.3
-0.1
-0.3
+0.6
carbon source
casaminos (C)
-1.7
+0.1
+0.2
+0.0
+0.4
carbon source
L-Glutamic (C)
-1.2
+0.0
-0.1
+0.1
+0.1
supernatant
Filtered_supernatant_MT71_in_LB
-1.3
+0.1
+0.0
+0.1
+0.2
stress
LB_noSalt with Zinc 0.5 mM
-1.9
+0.4
-0.2
+0.2
+0.7
carbon source
L-Glutamic (C)
-1.0
+0.3
-0.0
-0.2
+0.3
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.8
+0.4
+0.1
+0.1
-0.5
carbon source
L-Histidine (C)
-1.3
+0.2
+0.0
-0.3
+0.7
motility
Motility_outer_sample
-0.5
+0.3
-0.4
+0.2
-0.2
carbon source
D-Sorbitol (C)
-0.9
+0.4
+0.2
-0.1
-0.1
carbon source
D-Sorbitol (C)
-0.7
+0.6
+0.1
-0.3
-0.1
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-1.8
+1.1
+0.3
-0.1
+0.0
stress
LB_noSalt with Chloride 200 mM
-1.1
+0.4
-0.0
-0.0
+0.4
motility
Motility_outer_sample
-0.9
+0.4
-0.3
+0.0
+0.6
carbon source
D-Xylose (C)
-0.3
+0.6
+0.0
-0.1
-0.2
carbon source
L-Leucine (C)
-0.8
+0.6
+0.0
-0.1
+0.4
motility
Motility_inner_sample
+0.7
+0.4
+0.0
+0.0
-0.9
supernatant
Filtered_supernatant_MT81_in_LB
-0.6
+0.2
-0.1
+0.2
+0.4
carbon source
L-Leucine (C)
-0.4
+0.4
-0.2
-0.3
+0.8
motility
Motility_outer_sample_with_outgrowth
-0.9
+0.6
-0.2
-0.1
+1.0
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.3
+0.6
+0.1
+0.3
-0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.8
+0.0
+0.1
+0.1
-0.3
carbon source
Fumaric (C)
-0.5
+0.5
+0.2
-0.0
+0.5
carbon source
L-Rhamnose (C)
-0.5
+0.4
+0.2
+0.1
+0.6
carbon source
L-Aspartic Acid (C)
+0.7
+0.3
-0.1
-0.1
+0.3
carbon source
D-Glucose (C)
+0.5
+0.2
-0.1
-0.1
+0.7
carbon source
D-Fructose (C)
+0.9
+0.6
+0.1
-0.2
+0.1
supernatant
Filtered_supernatant_MT183_in_LB
+0.1
+0.4
+0.0
+0.3
+1.1
stress
LB_noSalt with Chloride 200 mM
+0.6
+0.6
+0.1
+0.2
+0.5
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QEN71_RS40875
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QEN71_RS40880
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QEN71_RS40885
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QEN71_RS40890
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QEN71_RS40895
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