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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS37405 and QEN71_RS37410 are separated by 160 nucleotides
QEN71_RS37410 and QEN71_RS37415 are separated by 255 nucleotides
QEN71_RS37415 and QEN71_RS37420 are separated by 478 nucleotides
QEN71_RS37420 and QEN71_RS37425 are separated by 9 nucleotides
QEN71_RS37405: QEN71_RS37405 - winged helix-turn-helix domain-containing protein, at 1,759,574 to 1,762,342
_RS37405
QEN71_RS37410: QEN71_RS37410 - alpha/beta hydrolase, at 1,762,503 to 1,763,495
_RS37410
QEN71_RS37415: QEN71_RS37415 - winged helix-turn-helix domain-containing protein, at 1,763,751 to 1,766,672
_RS37415
QEN71_RS37420: QEN71_RS37420 - AraC family transcriptional regulator, at 1,767,151 to 1,768,065
_RS37420
QEN71_RS37425: QEN71_RS37425 - HlyD family secretion protein, at 1,768,075 to 1,769,040
_RS37425
Group
Condition
QEN71
_RS37405
QEN71
_RS37410
QEN71
_RS37415
QEN71
_RS37420
QEN71
_RS37425
motility
Motility_outer_sample
+0.1
-0.3
-0.1
-0.4
-0.4
carbon source
D-Sorbitol (C)
-0.1
-0.3
-0.1
-0.3
+0.0
supernatant
Filtered_supernatant_MT71_in_LB
+0.0
-0.1
-0.1
-0.4
-0.3
motility
Motility_inner_sample
-0.2
+0.0
+0.1
-0.4
-0.3
carbon source
Fumaric (C)
+0.1
-0.3
-0.3
-0.1
-0.1
motility
Motility_outer_sample_with_outgrowth
-0.0
-0.3
-0.1
-0.3
+0.2
carbon source
D,L-Lactate (C)
-0.0
-0.1
+0.2
-0.1
-0.4
motility
Motility_outer_sample_with_outgrowth
+0.0
+0.2
+0.1
-0.6
-0.0
motility
Motility_outer_sample
+0.1
-0.3
-0.1
-0.2
+0.3
stress
LB_noSalt with Chloride 200 mM
+0.2
-0.1
-0.1
-0.5
+0.1
carbon source
D-Sorbitol (C)
-0.2
+0.2
-0.3
+0.2
-0.1
carbon source
succinate (C)
+0.1
-0.1
+0.1
-0.4
+0.2
carbon source
L-Aspartic Acid (C)
-0.1
+0.1
+0.3
-0.1
-0.3
carbon source
succinate (C)
+0.2
-0.2
+0.2
-0.3
+0.1
motility
Motility_inner_sample_with_outgrowth
+0.3
-0.1
+0.0
-0.4
+0.3
motility
Motility_outer_sample_with_outgrowth
+0.1
-0.1
+0.1
-0.3
+0.4
supernatant
Filtered_supernatant_MT81_in_LB
+0.1
+0.3
+0.2
-0.4
+0.0
stress
LB_noSalt with Chloride 200 mM
-0.1
+0.3
-0.3
-0.0
+0.4
stress
LB_noSalt with Cobalt chloride 0.25 mM
+0.1
+0.3
+0.1
-0.2
+0.0
coculture
Psabiae_ML3b with MT80
+0.0
+0.1
+0.1
-0.2
+0.4
carbon source
D-Fructose (C)
+0.2
+0.1
+0.1
-0.2
+0.3
stress
LB_noSalt with Zinc 0.5 mM
+0.2
-0.1
+0.2
+0.1
+0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
+0.3
-0.1
+0.4
-0.0
carbon source
L-Leucine (C)
+0.2
-0.0
+0.2
+0.2
+0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.2
+0.1
+0.1
+0.1
+0.2
carbon source
L-Rhamnose (C)
+0.1
-0.1
+0.4
+0.1
+0.3
carbon source
casaminos (C)
+0.0
+0.1
+0.2
+0.2
+0.2
motility
Motility_inner_sample
+0.3
+0.0
-0.2
+0.4
+0.3
supernatant
Filtered_supernatant_MT80_in_LB
+0.2
+0.4
+0.2
+0.2
+0.3
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
+0.7
-0.1
+0.1
+0.4
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