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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS37135 and QEN71_RS37140 are separated by 184 nucleotides
QEN71_RS37140 and QEN71_RS37145 are separated by 132 nucleotides
QEN71_RS37145 and QEN71_RS37150 are separated by 15 nucleotides
QEN71_RS37150 and QEN71_RS37155 are separated by 250 nucleotides
QEN71_RS37135: QEN71_RS37135 - HDOD domain-containing protein, at 1,699,231 to 1,700,697
_RS37135
QEN71_RS37140: QEN71_RS37140 - DUF3331 domain-containing protein, at 1,700,882 to 1,701,277
_RS37140
QEN71_RS37145: QEN71_RS37145 - TetR family transcriptional regulator, at 1,701,410 to 1,702,069
_RS37145
QEN71_RS37150: QEN71_RS37150 - hypothetical protein, at 1,702,085 to 1,702,354
_RS37150
QEN71_RS37155: QEN71_RS37155 - LysR substrate-binding domain-containing protein, at 1,702,605 to 1,703,015
_RS37155
Group
Condition
QEN71
_RS37135
QEN71
_RS37140
QEN71
_RS37145
QEN71
_RS37150
QEN71
_RS37155
motility
Motility_outer_sample_with_outgrowth
-1.4
+0.1
-5.8
-0.7
-1.5
motility
Motility_outer_sample_with_outgrowth
-1.4
-0.1
-5.8
-0.3
-1.1
motility
Motility_outer_sample_with_outgrowth
-1.4
+0.1
-5.7
-0.7
-0.1
motility
Motility_outer_sample
-1.3
+0.5
-5.7
-0.1
-1.1
motility
Motility_outer_sample_with_outgrowth
-1.4
+0.4
-5.8
-0.6
-0.3
motility
Motility_outer_sample
-1.0
+0.4
-5.9
+0.1
+0.3
motility
Motility_inner_sample
-0.4
-0.1
-5.1
-0.5
-0.0
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
-0.2
-5.7
+0.2
+0.0
motility
Motility_inner_sample
-0.5
-0.2
-2.9
-0.3
-0.7
motility
Motility_inner_sample_with_outgrowth
-0.3
+0.1
-4.1
-0.1
-0.1
motility
Motility_inner_sample
-0.5
+0.2
-3.8
-0.0
+0.3
motility
Motility_inner_sample_with_outgrowth
-0.4
-0.5
-2.5
-0.2
-0.1
motility
Motility_inner_sample
-0.6
+0.3
-2.5
+0.0
-0.2
carbon source
D-Glucose (C)
+0.2
-0.2
-2.2
-0.0
-0.6
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.2
+0.1
-2.3
+0.1
-0.6
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.3
+0.1
-1.4
-0.6
-0.7
stress
LB_noSalt with Chloride 200 mM
-0.0
-0.5
-0.4
+0.2
-1.6
stress
LB_noSalt with Cobalt chloride 0.25 mM
+0.0
+0.3
-1.5
-0.3
-0.7
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.1
-0.1
-1.9
-0.1
+0.2
stress
LB_noSalt with Chloride 200 mM
-0.0
+0.1
-1.2
+0.1
-1.0
stress
LB_noSalt with Chloride 200 mM
-0.2
+0.2
-0.6
+0.1
-1.4
supernatant
Filtered_supernatant_MT183_in_LB
+0.2
+0.3
-1.5
+0.0
-0.9
carbon source
D,L-Lactate (C)
-0.0
+0.6
-1.6
-0.0
-0.6
carbon source
L-Rhamnose (C)
+0.1
-0.1
-1.5
-0.1
-0.2
carbon source
casaminos (C)
+0.1
+0.0
-1.2
+0.1
-0.6
carbon source
D-Xylose (C)
+0.2
-0.7
-1.0
-0.1
+0.3
carbon source
Fumaric (C)
+0.2
+0.3
-1.2
+0.2
+0.1
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.8
-0.8
+1.1
+0.2
-0.7
stress
LB_noSalt with Zinc 0.5 mM
-0.2
-0.2
+2.8
-0.2
-0.9
stress
LB_noSalt with Zinc 0.5 mM
-0.1
-0.2
+2.8
+0.3
-0.9
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QEN71_RS37145
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