Fitness for 5 genes in Paraburkholderia sabiae LMG 24235

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500 ntQEN71_RS36660 and QEN71_RS36665 are separated by 64 nucleotidesQEN71_RS36665 and QEN71_RS36670 are separated by 38 nucleotidesQEN71_RS36670 and QEN71_RS36675 overlap by 4 nucleotidesQEN71_RS36675 and QEN71_RS36680 are separated by 241 nucleotides QEN71_RS36660: QEN71_RS36660 - DeoR/GlpR family DNA-binding transcription regulator, at 1,608,050 to 1,608,820 _RS36660 QEN71_RS36665: QEN71_RS36665 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,608,885 to 1,609,883 _RS36665 QEN71_RS36670: QEN71_RS36670 - four-carbon acid sugar kinase family protein, at 1,609,922 to 1,611,181 _RS36670 QEN71_RS36675: QEN71_RS36675 - 2-keto-3-deoxygluconate permease, at 1,611,178 to 1,612,176 _RS36675 QEN71_RS36680: QEN71_RS36680 - aromatic alcohol reductase, at 1,612,418 to 1,613,362 _RS36680
Group Condition QEN71_RS36660 QEN71_RS36665 QEN71_RS36670 QEN71_RS36675 QEN71_RS36680
carbon source 2-Deoxy-D-Ribose (C) -2.4 N.D. -0.2 -0.1 -0.3
motility Motility_outer_sample_with_outgrowth -2.2 N.D. +0.2 +0.2 -0.4
carbon source L-Glutamic (C) -1.7 N.D. -0.4 -0.1 +0.0
carbon source D-Fructose (C) -2.3 N.D. +0.1 +0.1 +0.1
stress LB_noSalt with Cobalt chloride 0.25 mM -1.0 N.D. -0.1 -0.2 -0.6
stress LB_noSalt with Zinc 0.5 mM -1.5 N.D. -0.5 -0.3 +0.5
stress LB_noSalt with Chloride 200 mM -1.8 N.D. +0.0 -0.0 +0.0
carbon source L-Leucine (C) -2.4 N.D. +0.2 -0.1 +0.6
carbon source L-Rhamnose (C) -1.6 N.D. -0.0 -0.1 +0.1
carbon source L-Rhamnose (C) -1.4 N.D. -0.2 +0.1 -0.1
stress LB_noSalt with Chloride 200 mM -1.9 N.D. -0.0 -0.2 +0.7
supernatant Filtered_supernatant_MT80_in_LB -1.3 N.D. +0.0 -0.2 +0.4
carbon source L-Leucine (C) -1.0 N.D. +0.0 +0.1 -0.2
motility Motility_outer_sample -1.0 N.D. -0.3 +0.1 +0.3
motility Motility_inner_sample +0.2 N.D. -0.6 +0.0 -0.4
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.1 N.D. +0.2 +0.1 +0.1
coculture Psabiae_ML3b with MT81 -0.6 N.D. -0.3 -0.1 +0.6
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 N.D. -0.3 +0.1 +0.5
carbon source D,L-Malic Acid (C) +0.4 N.D. +0.3 +0.0 -0.6
motility Motility_inner_sample +0.7 N.D. +0.3 -0.0 -0.5
carbon source succinate (C) +0.8 N.D. +0.1 -0.1 -0.3
in planta Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 N.D. -0.7 +0.1 +0.6
carbon source succinate (C) +0.9 N.D. -0.0 +0.0 -0.2
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 N.D. -0.2 -0.1 +0.4
carbon source L-Histidine (C) +1.2 N.D. -0.1 -0.0 -0.0
carbon source L-Glutamic (C) +0.3 N.D. -0.0 -0.0 +0.8
carbon source D-Glucose (C) +0.9 N.D. -0.5 +0.1 +0.7
carbon source D-Xylose (C) +1.1 N.D. +0.3 -0.0 +0.2
carbon source L-Histidine (C) +1.6 N.D. -0.0 -0.0 +0.3
carbon source D-Sorbitol (C) +1.5 N.D. -0.1 +0.0 +0.5
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