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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS35820 and QEN71_RS35825 are separated by 262 nucleotides
QEN71_RS35825 and QEN71_RS35830 are separated by 12 nucleotides
QEN71_RS35830 and QEN71_RS35835 are separated by 1 nucleotides
QEN71_RS35835 and QEN71_RS35840 are separated by 37 nucleotides
QEN71_RS35820: QEN71_RS35820 - MFS transporter, at 1,419,023 to 1,420,300
_RS35820
QEN71_RS35825: QEN71_RS35825 - shikimate dehydrogenase, at 1,420,563 to 1,421,378
_RS35825
QEN71_RS35830: QEN71_RS35830 - YciI family protein, at 1,421,391 to 1,421,714
_RS35830
QEN71_RS35835: QEN71_RS35835 - CoA transferase, at 1,421,716 to 1,422,921
_RS35835
QEN71_RS35840: QEN71_RS35840 - enoyl-CoA hydratase-related protein, at 1,422,959 to 1,423,750
_RS35840
Group
Condition
QEN71
_RS35820
QEN71
_RS35825
QEN71
_RS35830
QEN71
_RS35835
QEN71
_RS35840
stress
LB_noSalt with Chloride 200 mM
+0.0
-0.7
-1.3
+0.2
-0.4
motility
Motility_inner_sample_with_outgrowth
-0.4
-0.3
-0.8
-0.1
-0.1
motility
Motility_outer_sample_with_outgrowth
+0.0
+0.0
-0.6
+0.0
-1.1
motility
Motility_outer_sample
-0.0
-0.3
-0.6
-0.3
-0.4
motility
Motility_outer_sample_with_outgrowth
-0.3
+0.1
-1.6
+0.4
-0.1
coculture
Psabiae_ML3b with MT80
-0.3
+0.1
-0.9
-0.1
-0.2
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.3
-0.3
-0.5
-0.4
+0.2
carbon source
L-Histidine (C)
-0.4
-0.3
-0.2
+0.1
-0.5
motility
Motility_outer_sample_with_outgrowth
+0.0
-0.5
-0.5
+0.1
-0.3
carbon source
casaminos (C)
+0.0
+0.1
-1.0
-0.2
-0.1
carbon source
Fumaric (C)
-0.1
-0.1
-0.6
+0.0
-0.2
carbon source
D-Sorbitol (C)
-0.1
-0.5
-0.1
-0.2
-0.2
supernatant
Filtered_supernatant_MT71_in_LB
+0.0
-0.6
-0.3
+0.0
-0.1
motility
Motility_outer_sample
+0.2
-0.4
-0.2
-0.0
-0.5
stress
LB_noSalt with Zinc 0.5 mM
-0.2
-0.2
-0.4
+0.1
-0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.2
-0.4
+0.1
+0.0
-0.4
coculture
Psabiae_ML3b with MT81
-0.4
-0.3
+0.2
+0.3
-0.6
stress
LB_noSalt with Chloride 200 mM
-0.1
-0.5
-0.3
+0.2
-0.1
carbon source
L-Leucine (C)
-0.0
+0.1
-0.1
-0.2
-0.5
motility
Motility_inner_sample
-0.3
+0.3
-0.3
-0.2
-0.1
carbon source
D-Fructose (C)
-0.1
-0.1
-0.9
+0.1
+0.4
supernatant
Filtered_supernatant_MT183_in_LB
+0.2
-0.2
-0.2
+0.3
-0.6
stress
LB_noSalt with Chloride 200 mM
-0.4
-0.1
+0.1
+0.3
-0.4
carbon source
D-Glucose (C)
+0.2
+0.1
-0.8
+0.0
+0.1
supernatant
Filtered_supernatant_MT80_in_LB
-0.1
-0.3
-0.1
-0.3
+0.3
carbon source
D-Fructose (C)
-0.2
+0.3
-0.5
+0.4
-0.2
carbon source
Fumaric (C)
-0.4
-0.2
+0.1
+0.2
+0.2
carbon source
D,L-Malic Acid (C)
-0.3
+0.0
+0.3
+0.2
+0.4
carbon source
L-Aspartic Acid (C)
-0.3
+0.3
+0.5
+0.1
+0.1
supernatant
Filtered_supernatant_MT81_in_LB
-0.2
+0.1
+0.5
+0.1
+0.4
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QEN71_RS35830
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