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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS32580 and QEN71_RS32585 are separated by 1 nucleotides
QEN71_RS32585 and QEN71_RS32590 are separated by 26 nucleotides
QEN71_RS32590 and QEN71_RS32595 are separated by 8 nucleotides
QEN71_RS32595 and QEN71_RS32600 are separated by 125 nucleotides
QEN71_RS32580: QEN71_RS32580 - ABC transporter permease, at 646,330 to 647,214
_RS32580
QEN71_RS32585: QEN71_RS32585 - ABC transporter permease, at 647,216 to 648,010
_RS32585
QEN71_RS32590: QEN71_RS32590 - ABC transporter ATP-binding protein, at 648,037 to 649,134
_RS32590
QEN71_RS32595: QEN71_RS32595 - GntR family transcriptional regulator, at 649,143 to 649,838
_RS32595
QEN71_RS32600: QEN71_RS32600 - nuclear transport factor 2 family protein, at 649,964 to 650,443
_RS32600
Group
Condition
QEN71
_RS32580
QEN71
_RS32585
QEN71
_RS32590
QEN71
_RS32595
QEN71
_RS32600
stress
LB_noSalt with Zinc 0.5 mM
-0.2
+0.7
-0.0
-3.5
N.D.
motility
Motility_inner_sample
-0.2
+0.1
-0.6
-1.6
N.D.
carbon source
L-Leucine (C)
-0.4
-0.2
-0.0
-1.6
N.D.
supernatant
Filtered_supernatant_MT80_in_LB
-0.1
+0.6
+0.2
-2.8
N.D.
carbon source
Fumaric (C)
-0.6
-0.7
-0.1
-0.7
N.D.
carbon source
D-Xylose (C)
-0.0
+0.1
-0.6
-1.4
N.D.
motility
Motility_inner_sample
-0.4
-0.4
-0.6
-0.5
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.4
-0.4
-0.2
-0.7
N.D.
stress
LB_noSalt with Chloride 200 mM
-0.3
+0.3
-0.7
-0.9
N.D.
supernatant
Filtered_supernatant_MT71_in_LB
-0.3
-0.1
+0.0
-1.3
N.D.
motility
Motility_inner_sample
-0.6
-0.5
+0.4
-0.8
N.D.
motility
Motility_outer_sample_with_outgrowth
-0.2
-1.2
-0.1
+0.0
N.D.
motility
Motility_inner_sample_with_outgrowth
-0.5
+0.1
+0.0
-1.1
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
+0.1
-0.1
-1.0
N.D.
motility
Motility_outer_sample
-0.3
+0.3
-0.4
-0.8
N.D.
coculture
Psabiae_ML3b with MT80
+0.3
-0.9
-0.0
-0.5
N.D.
carbon source
D,L-Lactate (C)
-0.1
+0.4
-0.2
-0.9
N.D.
stress
LB_noSalt with Chloride 200 mM
-0.2
+0.9
-0.3
-1.3
N.D.
carbon source
D,L-Lactate (C)
-0.4
+0.3
+0.2
-0.9
N.D.
carbon source
L-Rhamnose (C)
-0.2
+0.3
+0.2
-1.1
N.D.
stress
LB_noSalt with Chloride 200 mM
+0.4
-1.3
+0.0
+0.2
N.D.
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.5
+0.2
+0.3
-0.6
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.3
+0.4
+0.1
-0.7
N.D.
carbon source
D-Glucose (C)
-0.6
+0.6
+0.2
-0.5
N.D.
carbon source
D-Sorbitol (C)
-0.3
-0.3
-0.2
+0.7
N.D.
motility
Motility_outer_sample_with_outgrowth
-0.2
-0.6
+0.2
+0.7
N.D.
motility
Motility_outer_sample_with_outgrowth
+0.5
-1.0
+0.1
+0.7
N.D.
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.4
+0.5
+0.6
-0.1
N.D.
supernatant
Filtered_supernatant_MT81_in_LB
-0.4
+0.7
+0.2
+0.4
N.D.
carbon source
casaminos (C)
-0.3
+0.8
+0.1
+0.3
N.D.
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