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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS31220 and QEN71_RS31225 are separated by 6 nucleotides
QEN71_RS31225 and QEN71_RS31230 are separated by 237 nucleotides
QEN71_RS31230 and QEN71_RS31235 are separated by 10 nucleotides
QEN71_RS31235 and QEN71_RS31240 overlap by 14 nucleotides
QEN71_RS31220: QEN71_RS31220 - flagellar transcriptional regulator FlhC, at 355,532 to 356,128
_RS31220
QEN71_RS31225: QEN71_RS31225 - NUDIX domain-containing protein, at 356,135 to 356,503
_RS31225
QEN71_RS31230: QEN71_RS31230 - CHAD domain-containing protein, at 356,741 to 357,652
_RS31230
QEN71_RS31235: QEN71_RS31235 - hypothetical protein, at 357,663 to 357,980
_RS31235
QEN71_RS31240: QEN71_RS31240 - acyclic terpene utilization AtuA family protein, at 357,967 to 359,325
_RS31240
Group
Condition
QEN71
_RS31220
QEN71
_RS31225
QEN71
_RS31230
QEN71
_RS31235
QEN71
_RS31240
carbon source
2-Deoxy-D-Ribose (C)
-0.4
-0.5
-0.4
N.D.
+0.0
carbon source
D,L-Malic Acid (C)
-0.3
-0.8
-0.4
N.D.
+0.1
motility
Motility_outer_sample_with_outgrowth
-0.3
-1.1
-0.0
N.D.
+0.3
carbon source
D-Glucose (C)
-0.2
-0.5
-0.2
N.D.
-0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
-0.3
-0.2
N.D.
-0.3
supernatant
Filtered_supernatant_MT71_in_LB
-0.3
-0.4
-0.2
N.D.
-0.2
carbon source
casaminos (C)
-0.1
-0.6
-0.3
N.D.
+0.1
carbon source
L-Leucine (C)
-0.1
-0.6
-0.2
N.D.
-0.0
motility
Motility_inner_sample
-0.4
-0.1
-0.4
N.D.
-0.1
motility
Motility_outer_sample_with_outgrowth
-0.4
-0.2
-0.3
N.D.
-0.0
carbon source
D-Xylose (C)
-0.5
-0.2
-0.2
N.D.
-0.1
carbon source
L-Aspartic Acid (C)
-0.1
-0.1
-0.6
N.D.
-0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
-0.4
+0.1
N.D.
-0.5
motility
Motility_outer_sample
-0.3
-0.4
-0.1
N.D.
+0.0
stress
LB_noSalt with Chloride 200 mM
-0.4
-0.5
+0.0
N.D.
+0.1
carbon source
D,L-Malic Acid (C)
-0.3
-0.3
-0.3
N.D.
+0.2
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
-0.5
+0.2
N.D.
-0.3
carbon source
L-Aspartic Acid (C)
+0.0
-0.3
-0.5
N.D.
+0.1
motility
Motility_outer_sample
+0.0
-0.4
-0.3
N.D.
+0.2
motility
Motility_inner_sample_with_outgrowth
-0.1
-0.6
+0.1
N.D.
+0.1
stress
LB_noSalt with Chloride 200 mM
-0.4
-0.3
-0.1
N.D.
+0.3
motility
Motility_inner_sample
-0.3
-0.5
-0.1
N.D.
+0.3
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.2
-0.3
-0.3
N.D.
+0.2
carbon source
D-Glucose (C)
-0.3
-0.3
+0.3
N.D.
-0.0
motility
Motility_inner_sample
-0.0
-0.3
-0.3
N.D.
+0.2
supernatant
Filtered_supernatant_MT183_in_LB
+0.2
+0.2
-0.4
N.D.
+0.1
carbon source
Fumaric (C)
+0.2
-0.2
-0.1
N.D.
+0.3
supernatant
Filtered_supernatant_MT81_in_LB
-0.4
+0.1
+0.3
N.D.
+0.2
motility
Motility_inner_sample_with_outgrowth
-0.4
+0.3
+0.2
N.D.
+0.2
carbon source
D-Sorbitol (C)
-0.2
+0.0
+0.5
N.D.
+0.2
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