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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS30175 and QEN71_RS30180 are separated by 380 nucleotides
QEN71_RS30180 and QEN71_RS30185 are separated by 28 nucleotides
QEN71_RS30185 and QEN71_RS30190 are separated by 76 nucleotides
QEN71_RS30190 and QEN71_RS30195 are separated by 224 nucleotides
QEN71_RS30175: QEN71_RS30175 - methanol/ethanol family PQQ-dependent dehydrogenase, at 121,545 to 123,272
_RS30175
QEN71_RS30180: QEN71_RS30180 - hypothetical protein, at 123,653 to 123,895
_RS30180
QEN71_RS30185: QEN71_RS30185 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 123,924 to 124,205
_RS30185
QEN71_RS30190: QEN71_RS30190 - pyrroloquinoline quinone precursor peptide PqqA, at 124,282 to 124,356
_RS30190
QEN71_RS30195: QEN71_RS30195 - SDR family oxidoreductase, at 124,581 to 125,327
_RS30195
Group
Condition
QEN71
_RS30175
QEN71
_RS30180
QEN71
_RS30185
QEN71
_RS30190
QEN71
_RS30195
carbon source
D-Fructose (C)
-0.1
-1.8
+0.3
-0.1
-0.5
carbon source
D-Sorbitol (C)
-0.1
-1.9
-0.1
+0.0
+0.2
carbon source
D-Xylose (C)
+0.1
-1.5
-0.0
-0.6
+0.2
carbon source
L-Histidine (C)
-0.1
-1.0
-0.2
-0.6
+0.3
stress
LB_noSalt with Zinc 0.5 mM
-0.1
-1.6
-0.0
+0.2
+0.0
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.2
-1.4
-0.3
+0.1
-0.2
carbon source
L-Leucine (C)
+0.1
-1.6
-0.1
+0.0
+0.2
carbon source
D,L-Malic Acid (C)
-0.1
-0.8
-0.2
-0.3
+0.0
carbon source
L-Aspartic Acid (C)
-0.1
-0.7
-0.2
+0.0
-0.3
carbon source
succinate (C)
+0.0
-1.0
+0.1
-0.5
+0.1
stress
LB_noSalt with Cobalt chloride 0.25 mM
-0.1
-1.0
+0.1
-0.4
+0.2
carbon source
L-Leucine (C)
-0.1
-1.2
+0.2
+0.3
-0.1
carbon source
2-Deoxy-D-Ribose (C)
-0.0
-1.1
-0.3
+0.2
+0.2
carbon source
casaminos (C)
-0.1
-1.3
+0.4
+0.3
-0.0
motility
Motility_inner_sample
-0.2
-0.3
+0.3
-0.3
-0.1
carbon source
L-Aspartic Acid (C)
+0.1
-0.4
+0.2
-0.3
-0.2
stress
LB_noSalt with Chloride 200 mM
-0.1
-1.0
+0.2
+0.6
-0.1
carbon source
D-Fructose (C)
+0.1
-0.5
+0.3
+0.2
-0.6
motility
Motility_inner_sample_with_outgrowth
-0.1
-0.2
-0.1
-0.4
+0.5
carbon source
L-Rhamnose (C)
-0.1
-0.7
+0.3
+0.3
-0.0
carbon source
Fumaric (C)
+0.0
-0.7
-0.1
+0.2
+0.3
carbon source
D-Glucose (C)
+0.1
-0.9
+0.1
+0.1
+0.4
motility
Motility_outer_sample_with_outgrowth
-0.2
-0.4
+0.3
+0.3
+0.0
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
-0.5
+1.2
-0.1
-0.5
stress
LB_noSalt with Chloride 200 mM
+0.0
+0.2
-0.6
+0.2
+0.5
motility
Motility_outer_sample
+0.2
-0.4
+0.4
+0.1
+0.4
carbon source
D,L-Malic Acid (C)
-0.1
+0.3
+0.3
-0.1
+0.5
motility
Motility_outer_sample_with_outgrowth
-0.1
+0.5
-0.1
+0.0
+0.6
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.2
+0.5
+2.6
-0.3
-0.1
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.1
+0.2
+1.5
+0.3
+0.5
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