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Cofit
Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS28905 and QEN71_RS28910 are separated by 33 nucleotides
QEN71_RS28910 and QEN71_RS28915 are separated by 11 nucleotides
QEN71_RS28915 and QEN71_RS28920 are separated by 107 nucleotides
QEN71_RS28920 and QEN71_RS28925 are separated by 239 nucleotides
QEN71_RS28905: QEN71_RS28905 - flagellar hook protein FlgE, at 6,407,906 to 6,409,414
_RS28905
QEN71_RS28910: QEN71_RS28910 - flagellar hook assembly protein FlgD, at 6,409,448 to 6,410,158
_RS28910
QEN71_RS28915: QEN71_RS28915 - flagellar basal body rod protein FlgC, at 6,410,170 to 6,410,595
_RS28915
QEN71_RS28920: QEN71_RS28920 - flagellar basal body rod protein FlgB, at 6,410,703 to 6,411,194
_RS28920
QEN71_RS28925: QEN71_RS28925 - flagellar basal body P-ring formation chaperone FlgA, at 6,411,434 to 6,412,738
_RS28925
Group
Condition
QEN71
_RS28905
QEN71
_RS28910
QEN71
_RS28915
QEN71
_RS28920
QEN71
_RS28925
motility
Motility_outer_sample
-4.3
-5.3
-4.1
-3.6
-4.1
motility
Motility_outer_sample_with_outgrowth
-4.2
-5.3
-4.1
-3.6
-4.1
motility
Motility_outer_sample_with_outgrowth
-4.4
-5.2
-4.0
-3.5
-4.0
motility
Motility_outer_sample
-4.4
-4.7
-4.1
-3.6
-4.1
motility
Motility_outer_sample_with_outgrowth
-4.3
-4.9
-4.0
-3.5
-4.1
motility
Motility_outer_sample_with_outgrowth
-4.3
-4.5
-4.1
-3.6
-4.1
motility
Motility_inner_sample_with_outgrowth
-3.6
-4.5
-3.0
-3.6
-4.0
motility
Motility_inner_sample
-3.8
-4.6
-3.5
-2.6
-3.3
motility
Motility_inner_sample
-3.3
-4.9
-3.4
-2.6
-3.6
motility
Motility_inner_sample_with_outgrowth
-4.0
-3.7
-3.1
-3.7
-3.2
motility
Motility_inner_sample
-3.8
-2.8
-2.5
-3.6
-3.4
motility
Motility_inner_sample
-3.2
-3.5
-2.6
-3.4
-3.0
stress
LB_noSalt with Zinc 0.5 mM
-2.1
-0.5
-3.1
-2.1
-1.5
stress
LB_noSalt with Zinc 0.5 mM
-1.7
-0.8
-1.7
-3.4
-1.5
carbon source
Fumaric (C)
+1.5
+1.0
+1.8
+1.5
+1.7
carbon source
D-Glucose (C)
+1.7
+1.3
+2.0
+1.2
+1.6
carbon source
L-Leucine (C)
+1.9
+0.9
+2.0
+1.7
+1.7
carbon source
D-Fructose (C)
+2.0
+1.2
+2.0
+1.2
+1.9
carbon source
D,L-Lactate (C)
+1.8
+1.3
+2.0
+1.7
+1.6
carbon source
L-Leucine (C)
+1.9
+1.3
+1.9
+1.9
+1.7
carbon source
2-Deoxy-D-Ribose (C)
+2.2
+1.0
+2.2
+1.5
+2.1
carbon source
2-Deoxy-D-Ribose (C)
+2.1
+0.9
+2.3
+2.4
+2.1
carbon source
D-Fructose (C)
+2.5
+1.5
+2.6
+1.5
+2.2
carbon source
D-Xylose (C)
+2.5
+1.5
+2.5
+2.0
+2.2
carbon source
L-Rhamnose (C)
+2.5
+1.6
+2.8
+1.9
+2.4
carbon source
L-Rhamnose (C)
+2.6
+1.5
+2.7
+2.4
+2.1
carbon source
D,L-Malic Acid (C)
+2.8
+1.4
+2.8
+2.6
+2.4
carbon source
L-Histidine (C)
+2.9
+1.9
+2.9
+2.3
+2.5
carbon source
D,L-Malic Acid (C)
+2.9
+1.8
+3.0
+2.6
+2.5
carbon source
L-Histidine (C)
+2.8
+1.8
+2.7
+2.8
+2.8
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