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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia sabiae LMG 24235
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
QEN71_RS28390 and QEN71_RS28395 are separated by 170 nucleotides
QEN71_RS28395 and QEN71_RS28400 are separated by 24 nucleotides
QEN71_RS28400 and QEN71_RS28405 are separated by 18 nucleotides
QEN71_RS28405 and QEN71_RS28410 are separated by 28 nucleotides
QEN71_RS28390: QEN71_RS28390 - SGNH/GDSL hydrolase family protein, at 6,297,980 to 6,299,248
_RS28390
QEN71_RS28395: QEN71_RS28395 - 1,2-phenylacetyl-CoA epoxidase subunit PaaA, at 6,299,419 to 6,300,417
_RS28395
QEN71_RS28400: QEN71_RS28400 - 1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 6,300,442 to 6,300,726
_RS28400
QEN71_RS28405: QEN71_RS28405 - 1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 6,300,745 to 6,301,548
_RS28405
QEN71_RS28410: QEN71_RS28410 - 1,2-phenylacetyl-CoA epoxidase subunit PaaD, at 6,301,577 to 6,302,137
_RS28410
Group
Condition
QEN71
_RS28390
QEN71
_RS28395
QEN71
_RS28400
QEN71
_RS28405
QEN71
_RS28410
carbon source
L-Leucine (C)
-0.0
-1.2
-1.1
-1.2
-0.8
carbon source
L-Leucine (C)
+0.0
-1.1
-1.2
-1.2
-0.7
in planta
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-1.1
-1.0
-1.0
-0.5
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-1.0
-0.9
-0.9
-0.3
motility
Motility_inner_sample_with_outgrowth
+0.1
-0.7
-0.7
-0.6
-0.6
carbon source
D-Xylose (C)
-0.2
-0.5
-0.5
-0.5
-0.7
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.0
-0.7
-0.6
-0.8
-0.0
motility
Motility_inner_sample_with_outgrowth
+0.2
-0.6
-0.6
-0.6
-0.5
carbon source
D-Sorbitol (C)
-0.1
-0.5
-0.6
-0.5
-0.3
supernatant
Filtered_supernatant_MT80_in_LB
+0.1
-0.5
-0.5
-0.4
-0.4
motility
Motility_inner_sample
+0.2
-0.5
-0.5
-0.5
-0.5
carbon source
D-Glucose (C)
-0.2
-0.5
-0.3
-0.5
-0.3
carbon source
L-Rhamnose (C)
-0.1
-0.5
-0.3
-0.5
-0.3
carbon source
L-Rhamnose (C)
-0.1
-0.4
-0.4
-0.5
-0.2
motility
Motility_inner_sample
+0.1
-0.4
-0.4
-0.4
-0.5
coculture
Psabiae_ML3b with MT80
-0.0
-0.4
-0.5
-0.4
-0.3
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-0.5
-0.6
-0.5
-0.1
carbon source
D-Sorbitol (C)
-0.1
-0.4
-0.4
-0.4
-0.1
motility
Motility_inner_sample
+0.2
-0.4
-0.4
-0.4
-0.3
motility
Motility_inner_sample
+0.1
-0.5
-0.4
-0.4
-0.2
carbon source
D-Fructose (C)
-0.2
-0.4
-0.2
-0.3
-0.3
carbon source
D-Glucose (C)
-0.1
-0.4
-0.3
-0.4
-0.3
carbon source
D-Fructose (C)
-0.1
-0.3
-0.2
-0.4
-0.3
supernatant
Filtered_supernatant_MT81_in_LB
+0.2
-0.3
-0.3
-0.4
-0.4
carbon source
2-Deoxy-D-Ribose (C)
+0.0
-0.3
-0.4
-0.3
-0.3
coculture
Psabiae_ML3b with MT81
-0.0
-0.3
-0.2
-0.3
-0.4
in planta
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
+0.1
-0.3
-0.3
-0.4
-0.3
carbon source
L-Histidine (C)
+0.0
-0.3
-0.2
-0.3
-0.3
supernatant
Filtered_supernatant_MT183_in_LB
+0.2
-0.2
-0.3
-0.2
-0.3
carbon source
casaminos (C)
+0.2
-0.2
-0.2
-0.1
-0.4
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